Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq251 226 2e-54 seq25 109 4e-19 >seq251 Length=3596318 Score = 226 bits (250), Expect = 2e-54 Identities = 399/578 (69%), Gaps = 5/578 (1%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| || || || | | ||||| | ||||| || || ||||| |||||| Sbjct 284282 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 284340 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | ||| || ||||||| |||||| |||| || || || | || || || | || || Sbjct 284341 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 284400 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||| ||||| ||| |||||||||||||||| ||||| || || | ||||||| Sbjct 284401 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGT- 284459 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 | || |||| || || ||||| || || ||||| ||| |||||| ||||| || | Sbjct 284460 CTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 284519 Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687 || | ||| || || || || | || | || ||| || |||||||| |||| || Sbjct 284520 GGGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGA 284579 Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747 |||| | ||||| | |||||| |||| || | || ||||| || || | Sbjct 284580 TGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTA 284639 Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807 | || | || || || |||| | | || ||| || || || |||| |||||||| Sbjct 284640 CTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACT 284699 Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCA 25867 | || | ||| || || ||||| |||| |||| ||| || ||| | |||| Sbjct 284700 GAAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCA 284756 Query 25868 AAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 25927 | | | ||| ||| ||||||||||||||||| || || ||||| || ||||| || | Sbjct 284757 AGACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 284816 Query 25928 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 ||||||||| || ||| |||||||||| ||| || Sbjct 284817 CGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCC 284854 >seq25 Length=14465811 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||| || || ||||| ||||| ||||| || Sbjct 2985527 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 2985586 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| ||||| ||| || ||| | ||||| ||||||| ||| ||||||||||| Sbjct 2985587 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 2985646 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 2985647 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 2985694 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||| | ||||| || |||||||||||||||| ||||| || || | |||||| Sbjct 2982299 GCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATG 2982358 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||||| |||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 2982359 T-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 2982417 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || || || || || Sbjct 2982418 AAGGGCGTGGCAGGGCGGGAGGGCCATGAG 2982447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340002571006329