Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq3709 86.0 3e-12
seq1280 84.2 1e-11
seq233 84.2 1e-11
seq8899 82.4 4e-11
seq1379 82.4 4e-11
>seq3709
Length=210978
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 42510 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 42569
Query 11512 CAACTGAGCTAATGGGCCGTCGA 11534
|||||||||||| |||| ||||
Sbjct 42570 CAACTGAGCTAACCGGCC-TCGA 42591
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 45938 AACTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 45997
Query 11512 CAACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 45998 CAACTGAGCTAACCGGCC 46015
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 205389 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 205330
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 205329 CTGAGCTAACCGGCC 205315
>seq1280
Length=1139451
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 105366 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 105307
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 105306 CTGAGCTAACCGGCC 105292
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 135100 GGATCGAACCCGCGACCTTAGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 135159
Query 11528 CCG 11530
|||
Sbjct 135160 CCG 135162
>seq233
Length=9406390
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || | |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 9217298 AAAATGAACTCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 9217239
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 9217238 CTCTAACCAACTGAGCTAACCGGCC 9217214
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 9365820 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9365879
Query 11528 CC 11529
||
Sbjct 9365880 CC 9365881
>seq8899
Length=5643
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 639 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 580
Query 11528 CC 11529
||
Sbjct 579 CC 578
>seq1379
Length=1045014
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 881449 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 881508
Query 11528 CC 11529
||
Sbjct 881509 CC 881510
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261387392324548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |