Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq801 152 7e-32
seq63 87.8 3e-12
>seq801
Length=8673260
Score = 152 bits (168), Expect = 7e-32
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| | || ||| |||||||||||| || | || || ||||| ||||||
Sbjct 3377684 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 3377743
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
|| |||||||||| |||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 3377744 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 3377803
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
||| || || ||||| | ||| | ||| || || | ||||| |||||||| |
Sbjct 3377804 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 3377863
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857
||||| ||||||||| | || ||||||| || || ||||
Sbjct 3377864 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 3377907
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 3378781 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 3378840
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || || |||||||| ||
Sbjct 3378841 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 3378900
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | ||||| |||||||||||| | | | ||| || || |
Sbjct 3378901 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 3378960
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| | |||| || |||||
Sbjct 3378961 TTTCCTCCCTGAAAAATGAGAA 3378982
Score = 100 bits (110), Expect = 4e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || |||| || || ||||| ||| ||||
Sbjct 3379306 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 3379365
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||||||||| || || |||||||||||| || | |||| || ||||| |
Sbjct 3379366 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 3379425
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||||||||||| || ||||| |||||
Sbjct 3379426 GGTGGGCTGTCAATCAGATGTGATCTTGCTGAA 3379458
>seq63
Length=4120113
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083
|| || ||||| || |||| | | || |||||| | || || || |||| | |||
Sbjct 57428 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 57485
Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 57486 TGAAGAACTGGTGAGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 57545
Query 10144 GATCGGGAGTGAAGGTCCTCC 10164
| || || |||| ||||||
Sbjct 57546 GGTCAGGTATGAACTTCCTCC 57566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708236315271120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |