Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq469 138 1e-27 seq99 93.3 4e-14 >seq469 Length=2995260 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| || || |||| |||||||||| ||| |||||||| || | ||| || Sbjct 1051323 TTAGACACCTCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTA 1051382 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| ||| ||||||| || || ||||| || Sbjct 1051383 GTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 1051442 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| || || || || ||||| | || || ||||||||| ||| |||||| | | Sbjct 1051443 TGGGGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGG 1051502 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 1051503 CTCCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGC 1051558 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| || || ||||| || | ||| || || | Sbjct 1051558 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1051617 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| || || ||||| ||||| || Sbjct 1051618 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1051677 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | || || Sbjct 1051678 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1051737 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 1051738 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGC 1051786 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| || || ||||| || | ||| || || | Sbjct 1051786 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1051845 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| || || ||||| ||||| || Sbjct 1051846 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1051905 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | || || Sbjct 1051906 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1051965 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 1051966 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGC 1052014 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| || || ||||| || | ||| || || | Sbjct 1052014 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1052073 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| || || ||||| ||||| || Sbjct 1052074 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1052133 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | || || Sbjct 1052134 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1052193 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 1052194 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGC 1052242 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| || || ||||| || | ||| || || | Sbjct 1052375 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1052434 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| || || ||||| ||||| || Sbjct 1052435 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1052494 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | || || Sbjct 1052495 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1052554 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 1052555 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGC 1052603 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| || || ||||| || | ||| || || | Sbjct 1052603 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1052662 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| || || ||||| ||||| || Sbjct 1052663 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1052722 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | || || Sbjct 1052723 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1052782 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 1052783 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGC 1052831 >seq99 Length=2554289 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| ||||| || || ||||| || | ||| ||||| Sbjct 1822036 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822095 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || | ||||| | | ||||| || ||||| Sbjct 1822096 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822155 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| || || | || || ||||| ||| ||| ||||| || || || || Sbjct 1822156 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCAC 1822214 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 1822215 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| ||||| || || ||||| || | ||| ||||| Sbjct 1822264 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822323 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || | ||||| | | ||||| || ||||| Sbjct 1822324 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822383 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| || || | || || ||||| ||| ||| ||||| || || || || Sbjct 1822384 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCAC 1822442 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 1822443 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1822490 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || ||||| || | ||| ||||| Sbjct 1816871 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1816930 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || | ||||| | || ||||| || ||||| Sbjct 1816931 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 1816990 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || ||| |||||| | | || || Sbjct 1816991 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1817050 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 1817051 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1817097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448108672634280