Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq48 134 2e-26
seq317 132 6e-26
seq279 107 2e-18
>seq48
Length=13907917
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |
Sbjct 107466 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 107525
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|||||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 107526 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 107585
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 107586 CTGTTTCTTATACCATA 107602
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 115794 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 115853
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| ||||| |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 115854 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 115913
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 115914 AGGCTCCAGGTAAATAGC 115931
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 111315 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 111374
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| ||||| | |||||| || || || ||| | || ||||| || |
Sbjct 111375 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCCGGACTCTCAAAAGGGT 111434
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
| | | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 111435 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 111494
Query 62755 TCTTATTAGA 62764
||||| ||
Sbjct 111495 GTTTATTTGA 111504
Score = 82.4 bits (90), Expect = 1e-10
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515
|| ||||| ||| | || |||||| ||| | | | ||| |||||||| ||| ||
Sbjct 119040 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 119099
Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575
|| || ||||| ||| | |||| |||||||| || || || ||||||||||| ||||
Sbjct 119100 GAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTATCATCTTTCATA 119159
Query 63576 TTAAGTAGAAAACAGCTA 63593
| || || |||||||||
Sbjct 119160 CTCAGAAGGAAACAGCTA 119177
>seq317
Length=3209840
Score = 132 bits (146), Expect = 6e-26
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||| |
Sbjct 2108762 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 2108703
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||| ||||| |||||||
Sbjct 2108702 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 2108643
Query 33446 C 33446
|
Sbjct 2108642 C 2108642
Score = 93.3 bits (102), Expect = 5e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| || || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 2106646 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2106587
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| || || || |||||||| | || || |||||||| |||||| | ||| || ||
Sbjct 2106586 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTC 2106527
Query 33684 CGCC 33687
| ||
Sbjct 2106526 CACC 2106523
>seq279
Length=9007507
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| ||
Sbjct 4426775 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 4426716
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||||||||| | ||| || || || || ||||| |||||||| || |||||||||||
Sbjct 4426715 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 4426657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622693559260680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |