Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq615 114 1e-20
seq469 105 6e-18
seq119 105 6e-18
seq164 93.3 4e-14
>seq615
Length=2269971
Score = 114 bits (126), Expect = 1e-20
Identities = 154/214 (72%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || || || |||| || || || || |||
Sbjct 1647326 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 1647385
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| || || ||||| ||||| || ||||||||||| || ||||| ||||
Sbjct 1647386 GTGACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATC 1647445
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || |||| ||||||||| |||||||| | |||| | || || ||||
Sbjct 1647446 AGCAGCGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACA 1647505
Query 22397 ACA---TTCAAAAAGAATCCACCATACATTTAGT 22427
| | |||| || || |||||| | || |||||
Sbjct 1647506 ATATTCTTCAGAAGGAGTCCACCCTGCACTTAGT 1647539
>seq469
Length=2995260
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 1051556 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051497
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || || ||
Sbjct 1051496 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1051437
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || |||||||| |||||| | || ||| |||||| | || || ||||||
Sbjct 1051436 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1051377
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || |||||||| | || || || |||| || | ||||||
Sbjct 1051376 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGTTTAAGGGGAGGT 1051329
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 1051784 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051725
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || || ||
Sbjct 1051724 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1051665
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || |||||||| |||||| | || ||| |||||| | || || ||||||
Sbjct 1051664 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1051605
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1051604 ATCCAGAAGGAGTCCACC 1051587
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 1052012 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051953
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || || ||
Sbjct 1051952 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1051893
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || |||||||| |||||| | || ||| |||||| | || || ||||||
Sbjct 1051892 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1051833
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1051832 ATCCAGAAGGAGTCCACC 1051815
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 1052240 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052181
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || || ||
Sbjct 1052180 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1052121
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || |||||||| |||||| | || ||| |||||| | || || ||||||
Sbjct 1052120 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1052061
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1052060 ATCCAGAAGGAGTCCACC 1052043
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 1052601 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052542
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || || ||
Sbjct 1052541 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1052482
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || |||||||| |||||| | || ||| |||||| | || || ||||||
Sbjct 1052481 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1052422
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1052421 ATCCAGAAGGAGTCCACC 1052404
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 1052829 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052770
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || || ||
Sbjct 1052769 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1052710
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || |||||||| |||||| | || ||| |||||| | || || ||||||
Sbjct 1052709 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1052650
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1052649 ATCCAGAAGGAGTCCACC 1052632
>seq119
Length=227305
Score = 105 bits (116), Expect = 6e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| | ||||| || || | | || || || |||| ||||| || || |||
Sbjct 86861 AGATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCA 86802
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| || || ||||| ||||| |||||||||||||| || ||||| || |
Sbjct 86801 GTGACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 86742
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | ||| || ||||| |||||||| | |||||| ||||| || || ||||
Sbjct 86741 AGCAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTCCATCAGACTACA 86682
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427
| ||||| ||||| |||||| | || || ||
Sbjct 86681 ATATTCAGAAAGAGTCCACCCTGCACTTGGT 86651
>seq164
Length=6526486
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
|||| || || ||||| || || | || || || || |||| || || || || |||
Sbjct 3962501 AGATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCA 3962442
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | || ||||| | ||| ||||||||||||| || ||||| || |
Sbjct 3962441 CTGACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACC 3962382
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | ||| || || | || |||||| | |||||| ||| || | || ||||||
Sbjct 3962381 AGCAGCATCTCATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACG 3962322
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
| |||| ||||| |||||| | |||| ||| | || ||| | || ||
Sbjct 3962321 ATGTTCAGAAAGAGTCCACCTTGCATTCAGTGCTTCGTTTGGGAGGCGG 3962273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419561374935745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |