Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq469 178 2e-39
seq99 174 3e-38
seq119 111 3e-19
seq164 104 4e-17
seq224 84.2 4e-11
>seq469
Length=2995260
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 1051567 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1051626
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || | || || ||||| || || ||||| |||
Sbjct 1051627 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1051686
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 1051687 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1051746
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 1051747 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 1051795 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1051854
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || | || || ||||| || || ||||| |||
Sbjct 1051855 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1051914
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 1051915 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1051974
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 1051975 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 1052023 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1052082
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || | || || ||||| || || ||||| |||
Sbjct 1052083 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1052142
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 1052143 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1052202
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 1052203 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 1052384 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1052443
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || | || || ||||| || || ||||| |||
Sbjct 1052444 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1052503
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 1052504 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1052563
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 1052564 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 1052612 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1052671
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || | || || ||||| || || ||||| |||
Sbjct 1052672 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1052731
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 1052732 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1052791
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 1052792 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829
Score = 176 bits (194), Expect = 8e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
|||| |||||||| || ||||| || || |||||||| || || || || || | ||||
Sbjct 1051342 CGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 1051401
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
||||| | ||| |||||||| || || | || || ||||| || || ||||| ||||||
Sbjct 1051402 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 1051461
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
||||| ||||| ||||||||| |||||||||||| | || || |||| |||||||
Sbjct 1051462 TCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 1051521
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | |||||| ||||| ||||||||
Sbjct 1051522 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556
>seq99
Length=2554289
Score = 174 bits (192), Expect = 3e-38
Identities = 174/223 (78%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || || ||||| || |||||||| ||||| || || || |
Sbjct 1822273 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1822332
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| ||||| | || ||||| || || |||||||||
Sbjct 1822333 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCC 1822392
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
|| || || ||||| ||||| ||| |||||||||||| ||| | || || |||| |||
Sbjct 1822393 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCACCTCCAGGGT 1822451
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|||||| || ||||| | |||||| ||||| ||||||||| ||
Sbjct 1822452 GATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 1822494
Score = 172 bits (190), Expect = 1e-37
Identities = 171/219 (78%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || || ||||| || |||||||| ||||| || || || |
Sbjct 1822045 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1822104
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| ||||| | || ||||| || || |||||||||
Sbjct 1822105 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCC 1822164
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
|| || || ||||| ||||| ||| |||||||||||| ||| | || || |||| |||
Sbjct 1822165 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCACCTCCAGGGT 1822223
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || |||||||| ||||| ||||||||
Sbjct 1822224 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262
Score = 163 bits (180), Expect = 5e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || ||||| || |||||||| ||||| || || || | ||||||||
Sbjct 1816889 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1816948
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || ||||| ||||| || || ||||| || || ||||| ||||| || ||
Sbjct 1816949 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 1817008
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| || |||||||||||| | || || |||| ||||||||| ||
Sbjct 1817009 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1817068
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||| | |||||| ||||| ||||||||| ||
Sbjct 1817069 CCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 1817101
Score = 87.8 bits (96), Expect = 3e-12
Identities = 82/102 (80%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAA 68419
||||| || || ||||| ||||| ||| |||||||||||| ||| | || || ||||
Sbjct 1821934 TCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCACCTCCAG 1821992
Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||| || || || |||||||| ||||| ||||||||
Sbjct 1821993 GGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822034
>seq119
Length=227305
Score = 111 bits (122), Expect = 3e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| || ||||||||||| || || || || || || | || | ||||| ||
Sbjct 86651 ACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCC 86710
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || | || || || || || ||||| ||||| ||||| |||||||||||
Sbjct 86711 AGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 86770
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || || ||||| ||| ||||||| | || || || | ||||||||| ||
Sbjct 86771 ATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 86830
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | |||||||| || || | ||||||
Sbjct 86831 CCCATCAGGGTCTTCACAAAGACCTGCAT 86859
>seq164
Length=6526486
Score = 104 bits (114), Expect = 4e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324
||||||||||| || | | ||||| || || || | ||||| || | ||| |||||
Sbjct 3962303 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 3962362
Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384
| ||| ||||| || ||||| ||||| ||||| |||||||||| || | || |||
Sbjct 3962363 GTGAAAATGAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 3962422
Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444
|| || ||||||| | || || || || | |||||| || || || || ||||||
Sbjct 3962423 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 3962482
Query 68445 TTGACGAATATCTGCAT 68461
|| || || ||||| ||
Sbjct 3962483 TTCACAAAGATCTGTAT 3962499
>seq224
Length=3327291
Score = 84.2 bits (92), Expect = 4e-11
Identities = 110/150 (73%), Gaps = 3/150 (2%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||| || |||||||| |||| || ||| | |||||||||
Sbjct 899346 ACCAGGTGCAGGGTTGACT--TTCTGGATGTTGTAATTAGAAAGTATGAGGCCATCTTCT 899289
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG-GTGGAATGCCTTCCTTGTCTTG 68371
| ||| || | || || ||||| || || ||| || | || ||||| ||||| || ||
Sbjct 899288 AGCTGTTTGACTGCAAAGATGAGCCTCTGCTGGCTGGTGGGGGATGCCGTCCTTATCCTG 899229
Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
||||||||||| || ||||||| ||||
Sbjct 899228 GATCTTTGCCTTCACATTCTCGATGATGTC 899199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921247149919560
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