Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq317 87.8 3e-12 seq279 84.2 4e-11 >seq317 Length=3209840 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || |||||||| || || | || || || || |||||| Sbjct 2108639 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 2108698 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || ||| | |||||| || ||||| || || || ||||| || ||||| || Sbjct 2108699 CTCAAGAAGCGAGGACT-GATGCCGGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 2108757 Query 42827 CGAGG 42831 ||||| Sbjct 2108758 CGAGG 2108762 >seq279 Length=9007507 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || |||||||| ||| | || || Sbjct 4426642 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCAGGCTCTTTTGCT 4426701 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| ||| |||| | ||||| || ||||| || || || ||||| Sbjct 4426702 GCTATATTTTGGCTGAAGAAGAGAGGTCTT-ATGCCTGGCCTCACTTTTTCCAATGAACT 4426760 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 4426761 CATCAGCAGAGATGA 4426775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943954700490480