Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq251 217 1e-51 seq25 105 6e-18 >seq251 Length=3596318 Score = 217 bits (240), Expect = 1e-51 Identities = 450/669 (67%), Gaps = 3/669 (0%) Strand=Plus/Plus Query 20153 CGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAAC 20212 |||| ||||||| |||||||| | || | ||| ||||| ||||||||||| Sbjct 284300 CGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAA 284359 Query 20213 GTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGG 20272 ||||| | || || || || | || || || | || |||| ||| || || | || Sbjct 284360 GTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGA 284419 Query 20273 GAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGC 20332 || |||||||| ||||| || || || |||| ||||||||||| |||| || ||||||| Sbjct 284420 GAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGC 284479 Query 20333 TGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGC 20392 || ||||| |||||||||| | || || || || || | || |||||||| || Sbjct 284480 TGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGG 284539 Query 20393 GCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGA 20452 ||| | | || | || || ||||| |||||||| ||||||||||| || | || Sbjct 284540 GCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTTCTGTCATTAGGG 284599 Query 20453 TTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCA 20512 || |||| ||| || | | | || |||||| | || | ||||| ||| || Sbjct 284600 TTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 284659 Query 20513 GCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCC 20572 | ||||| || |||| | |||||||| ||||||||||| || | ||| || || || Sbjct 284660 GAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCT 284719 Query 20573 AAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTT 20632 | ||| || || |||| | | || | | | ||| || | | ||| ||||| Sbjct 284720 AGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCTCGGGACCCATTG 284776 Query 20633 TTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGA 20692 |||||| || || ||||| | || |||||| | | || || ||||| | | Sbjct 284777 GCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATA 284836 Query 20693 AACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGA 20752 ||||| |||| || | || || || ||| || || || || || || || | ||| Sbjct 284837 AACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGA 284896 Query 20753 AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCG 20812 || | || | || || || | ||||||||||| || | || |||||||| |||| Sbjct 284897 AATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCC 284956 Query 20813 GTGCGGTCG 20821 |||| |||| Sbjct 284957 GTGCAGTCG 284965 >seq25 Length=14465811 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 20270 AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATAC 20329 ||||| |||||||| ||||| || || || |||| |||||||||||||||| ||| ||| Sbjct 2982317 AGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTAC 2982376 Query 20330 AGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGA 20389 ||||| ||||| |||||||||| | || || || || || | ||| |||||||| Sbjct 2982377 AGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGG 2982436 Query 20390 AGCGCCAT 20397 || ||||| Sbjct 2982437 AGGGCCAT 2982444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441193089547320