Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq99 132 1e-25
seq615 113 1e-19
>seq99
Length=2554289
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || | || ||||| || ||||| | || || |||||||||
Sbjct 1822072 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 1822131
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || ||||| || | ||||| ||||| ||||||||||| || || ||||||||
Sbjct 1822132 ATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1822191
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| | || || || || ||||| ||||| |||||||| ||||| |||
Sbjct 1822192 TCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1822251
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1822252 AAGATCTGCAT 1822262
Score = 127 bits (140), Expect = 5e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || | || ||||| || ||||| | || || |||||||||
Sbjct 1822300 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 1822359
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || ||||| || | ||||| ||||| ||||||||||| || || ||||||||
Sbjct 1822360 ATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1822419
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| | || || || || ||||| ||||| || |||| ||||| |||
Sbjct 1822420 TCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACG 1822479
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 1822480 AAGATCTGCATTTTG 1822494
Score = 109 bits (120), Expect = 1e-18
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || | || ||||| || ||||| | || || |||||||||
Sbjct 1816907 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 1816966
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||||| || || ||||||||||| || || ||||| ||
Sbjct 1816967 ATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTC 1817026
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| || |||| ||||| |||
Sbjct 1817027 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACG 1817086
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 1817087 AAGATCTGCATTTTG 1817101
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432
|| ||||||||||| || || |||||||| || || | ||||| | || || || ||
Sbjct 1821934 TCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGG 1821993
Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 1821994 GTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822034
>seq615
Length=2269971
Score = 113 bits (124), Expect = 1e-19
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351
||||| ||||| | || |||| || || |||| ||||| || | || |||||||||
Sbjct 1647509 ATATTGTAGTCTGACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGACGC 1647450
Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411
|| ||| | |||||| || || || ||||||||||| ||||| || || || | |
Sbjct 1647449 TGCTGATCAGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTG 1647390
Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471
|| || | || || ||||| ||||| ||||| || ||||| ||||| || || ||||||
Sbjct 1647389 TCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGC 1647330
Query 288472 AT 288473
||
Sbjct 1647329 AT 1647328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179162081189494
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |