Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq99 125 8e-24
seq119 100 3e-16
seq3709 93.3 5e-14
seq684 91.5 2e-13
seq10222 89.7 6e-13
seq1280 89.7 6e-13
seq469 89.7 6e-13
seq205 86.0 7e-12
seq89 86.0 7e-12
seq2167 82.4 8e-11
>seq99
Length=2554289
Score = 125 bits (138), Expect = 8e-24
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || || | ||||| |||| |||| || |||||| || || ||||||||||
Sbjct 1822263 ACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 1822322
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || |||||||| || ||||| ||||| ||||||||||| | ||
Sbjct 1822323 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGG 1822382
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || ||||| ||| ||| || || | || | | |||||||| | |||||
Sbjct 1822383 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCAC 1822442
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| | |||||||| |||||||| | ||||| || ||||| |||||||| ||
Sbjct 1822443 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTGAC 1822496
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || || | ||||| |||| |||| || |||||| || || ||||||||||
Sbjct 1822035 ACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 1822094
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || |||||||| || ||||| ||||| ||||||||||| | ||
Sbjct 1822095 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGG 1822154
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || ||||| ||| ||| || || | || | | |||||||| | |||||
Sbjct 1822155 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCAC 1822214
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 1822215 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262
>seq119
Length=227305
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| ||| ||| || ||||||||||| || | |||| || | || ||
Sbjct 86650 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 86709
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
||||| || | || || || || |||||||||| | ||| | || |||||||||
Sbjct 86710 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 86769
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
|||||| ||||| || | ||||| || | || || || | |||||||| ||
Sbjct 86770 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 86829
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| | || ||||| ||||||| |||||
Sbjct 86830 GCCCATCAGGGTCTTCACAAAGACCTGCAT 86859
>seq3709
Length=210978
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 91324 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 91265
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||| ||
Sbjct 91264 ATACTAACGAGGAATG 91249
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 134982 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 135041
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 135042 TACTAACGAGGA 135053
>seq684
Length=8613401
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2188118 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2188059
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 2188058 ATACTAACGAGGA 2188046
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4043078 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4043019
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 4043018 ATACTAACGAGGA 4043006
>seq10222
Length=1112
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 461
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 460 TACTAACGAGGA 449
>seq1280
Length=1139451
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 109922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 109863
Query 57066 ATACTACCGAGGATTGA 57082
|||||| |||||| |||
Sbjct 109862 ATACTAACGAGGAATGA 109846
>seq469
Length=2995260
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1063101 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1063160
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1063161 TACTAACGAGGA 1063172
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1069971 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1070030
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1070031 TACTAACGAGGA 1070042
>seq205
Length=8045950
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| | | ||||| | ||| |||| | | |||||| | |||| ||
Sbjct 434688 CACCAAGTGCAGGGCGGACTCCT---GGATACTGTAGTGTGACAGAGTGTCCCCGTCCTC 434744
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
||||| || || || || || || |||||||||| | || | || |||||||||
Sbjct 434745 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 434804
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| |||| ||||| || | ||||| || | || || ||| ||||||| ||
Sbjct 434805 GGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACC-CGAGGGTGATGGCCTT 434863
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||||||| ||||| |||||||| |||||
Sbjct 434864 GCCCGTTAGGGTCTTCACAAAGATCTGCAT 434893
>seq89
Length=3644534
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| |||||||| || || | | | || || | ||||| ||||| | || |||||
Sbjct 1710816 CTCCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAA 1710757
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
| || ||||||||||| | ||| | || ||||||||| ||||||| | ||| |
Sbjct 1710756 ACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGACATT 1710697
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| | | || || |||| |||| ||| |||||| | || |||| ||
Sbjct 1710696 CTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTTCAC 1710637
Query 42197 AAAGA 42201
|||||
Sbjct 1710636 AAAGA 1710632
>seq2167
Length=69529
Score = 82.4 bits (90), Expect = 8e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 57077
|||||||||| ||||||||||||||||||| || ||||| |||||||||||| |||||
Sbjct 53506 AATCGAACCCCGGTCTCCCGCGTGACAGGCAGAGATACTTACCACTATACTAACGAGG 53563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542991624118320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |