Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq801 163 4e-35
>seq801
Length=8673260
Score = 163 bits (180), Expect = 4e-35
Identities = 219/302 (73%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| | || || ||||| || |||||||| || ||||| |||||||| |
Sbjct 3376200 AACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 3376259
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | |||||||| || || || || |||||||| ||||||||| |
Sbjct 3376260 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGCTTCCAGTACTC 3376319
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC-TCGA 9053
|| || || || || |||| || ||||||||||| || || | | ||||| || |
Sbjct 3376320 AGGAGAACATATAGGATTACCCATCAGTCCTTTCAAGGAGAATGGTG-CTCCAGCTTCTA 3376378
Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGA 9113
||| |||| || ||||||||| | ||||| || ||||| || | | | ||| || |
Sbjct 3376379 CCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACA 3376438
Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173
|||| | | || | ||| |||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 3376439 GTTCCATGACATCAATGTCACCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 3376498
Query 9174 CT 9175
||
Sbjct 3376499 CT 3376500
Score = 143 bits (158), Expect = 4e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || |||||| |||| ||| ||||||| || || || || || || ||||| || ||
Sbjct 3377684 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 3377743
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
|| |||||||| | |||||| || |||||||||||||| | ||| ||||| | ||||||
Sbjct 3377744 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 3377803
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
| || | |||||| ||||| |||| | || || || | || | || | ||| |
Sbjct 3377804 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 3377863
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
||||| || |||||||| || || ||||||| || || |||| ||||
Sbjct 3377864 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAATTACCT 3377912
Score = 105 bits (116), Expect = 1e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || |||||||| || || ||||| |||| ||| |||
Sbjct 3379306 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 3379365
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| ||||| ||||| ||||||||||| || |||||||| | | |||||
Sbjct 3379366 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 3379425
Query 10507 GGGGGACTGTCAATCA 10522
|| || ||||||||||
Sbjct 3379426 GGTGGGCTGTCAATCA 3379441
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| || |||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 3378781 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 3378840
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || || |||||||| ||
Sbjct 3378841 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 3378900
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || | || | | || | ||| ||||||| | | ||||||| || ||
Sbjct 3378901 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAG 3378957
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || ||||||| | |||| || || || || ||||| || ||| ||| |
Sbjct 3380415 CTTACGTGTTGAACAGTTTTCACCATAGAATCCTGTTCGGGTACAGTCACACTTATACTG 3380474
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| || || |||| ||||| |||||||||||||| |||| ||||||||||| ||
Sbjct 3380475 GTCAAATCCTACGCTCATACATACACCTCGATTCTGGCATGGGTTGGAACAGCAAGGATT 3380534
Query 10960 GGCTGCAAT 10968
||| ||||
Sbjct 3380535 TGCTACAAT 3380543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723433325098200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |