Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq801 163 4e-35 >seq801 Length=8673260 Score = 163 bits (180), Expect = 4e-35 Identities = 219/302 (73%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || ||||| || |||||||| || ||||| |||||||| | Sbjct 3376200 AACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 3376259 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || |||||||| ||||||||| | Sbjct 3376260 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGCTTCCAGTACTC 3376319 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC-TCGA 9053 || || || || || |||| || ||||||||||| || || | | ||||| || | Sbjct 3376320 AGGAGAACATATAGGATTACCCATCAGTCCTTTCAAGGAGAATGGTG-CTCCAGCTTCTA 3376378 Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGA 9113 ||| |||| || ||||||||| | ||||| || ||||| || | | | ||| || | Sbjct 3376379 CCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACA 3376438 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 |||| | | || | ||| |||||||| ||||| ||||| ||||| || |||||||| | Sbjct 3376439 GTTCCATGACATCAATGTCACCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 3376498 Query 9174 CT 9175 || Sbjct 3376499 CT 3376500 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||| |||| ||| ||||||| || || || || || || ||||| || || Sbjct 3377684 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 3377743 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 || |||||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 3377744 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 3377803 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 | || | |||||| ||||| |||| | || || || | || | || | ||| | Sbjct 3377804 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 3377863 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || |||||||| || || ||||||| || || |||| |||| Sbjct 3377864 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAATTACCT 3377912 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || |||||||| || || ||||| |||| ||| ||| Sbjct 3379306 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 3379365 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| || |||||||| | | ||||| Sbjct 3379366 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 3379425 Query 10507 GGGGGACTGTCAATCA 10522 || || |||||||||| Sbjct 3379426 GGTGGGCTGTCAATCA 3379441 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| || |||| | |||||||| ||||||||| ||| ||| | || Sbjct 3378781 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 3378840 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || || |||||||| || Sbjct 3378841 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 3378900 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || | ||| ||||||| | | ||||||| || || Sbjct 3378901 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAG 3378957 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| || || || || ||||| || ||| ||| | Sbjct 3380415 CTTACGTGTTGAACAGTTTTCACCATAGAATCCTGTTCGGGTACAGTCACACTTATACTG 3380474 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| || || |||| ||||| |||||||||||||| |||| ||||||||||| || Sbjct 3380475 GTCAAATCCTACGCTCATACATACACCTCGATTCTGGCATGGGTTGGAACAGCAAGGATT 3380534 Query 10960 GGCTGCAAT 10968 ||| |||| Sbjct 3380535 TGCTACAAT 3380543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723433325098200