Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq99 154 3e-32 seq469 122 2e-22 >seq99 Length=2554289 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || ||||||||||| |||| |||||| |||| | ||| | ||||| Sbjct 1822050 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1822109 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || ||||||||||| ||||||||||| ||| || ||||| || Sbjct 1822110 TTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1822169 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| ||||| || Sbjct 1822170 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 1822229 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 1822230 CTTGCCGGTCAGGGTCTTCACGAAGATCTG 1822259 Score = 154 bits (170), Expect = 3e-32 Identities = 166/219 (76%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || ||||||||||| |||| |||||| |||| | ||| | ||||| Sbjct 1822278 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1822337 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || ||||||||||| ||||||||||| ||| || ||||| || Sbjct 1822338 TTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1822397 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| ||||| || Sbjct 1822398 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 1822457 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| | || ||||| || || || |||||| Sbjct 1822458 CTTGCCCGTCAAGGTCTTCACGAAGATCTG---CATTTT 1822493 Score = 140 bits (154), Expect = 8e-28 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| |||| |||||| |||| | ||| | |||||| Sbjct 1816886 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1816945 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||||||||| | ||||||||| ||| || || || ||| Sbjct 1816946 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1817005 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 1817006 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1817065 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| | || ||||| || || || |||||| Sbjct 1817066 TTGCCCGTCAAGGTCTTCACGAAGATCTG---CATTTT 1817100 >seq469 Length=2995260 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 1051572 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051631 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1051632 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051691 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1051692 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051751 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| | || ||||| || || || Sbjct 1051752 CTTACCCGTCAAGGTCTTCACGAAGATCTG 1051781 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 1051800 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051859 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1051860 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051919 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1051920 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051979 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| | || ||||| || || || Sbjct 1051980 CTTACCCGTCAAGGTCTTCACGAAGATCTG 1052009 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 1052028 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052087 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1052088 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052147 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1052148 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052207 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| | || ||||| || || || Sbjct 1052208 CTTACCCGTCAAGGTCTTCACGAAGATCTG 1052237 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 1052389 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052448 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1052449 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052508 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1052509 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052568 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| | || ||||| || || || Sbjct 1052569 CTTACCCGTCAAGGTCTTCACGAAGATCTG 1052598 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 1052617 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052676 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1052677 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052736 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1052737 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052796 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| | || ||||| || || || Sbjct 1052797 CTTACCCGTCAAGGTCTTCACGAAGATCTG 1052826 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| || ||||| |||| ||||||||||| || || | ||||| Sbjct 1051344 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051403 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| || || || || || Sbjct 1051404 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051463 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 1051464 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051523 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| | || ||||| || || || Sbjct 1051524 CTTACCCGTCAAGGTCTTCACGAAGATCTG 1051553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178429587017391