Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq469 96.9 2e-15 >seq469 Length=2995260 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 39502 AAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGT 39561 |||||||| ||||| |||| |||| ||| || || || || || || | || ||| Sbjct 1051339 AAACGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1051398 Query 39562 TCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCT 39621 |||| |||| ||||||||| |||| || || | |||||| || | ||| | ||| || Sbjct 1051399 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1051458 Query 39622 TTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCACGTCCAAAG 39679 ||||| || || || | || | | ||||| || ||| |||| |||| | Sbjct 1051459 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CCACCTCCAGGG 1051516 Query 39680 TAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || |||||||| || || || ||||||||||||||| Sbjct 1051517 TGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1051557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||| ||| || || || || || || || | Sbjct 1051557 GCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1051616 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||||||||| |||| || || | |||||| || | ||| Sbjct 1051617 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1051676 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669 | ||| || ||||| || || || | || | | ||||| || ||| || Sbjct 1051677 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CC 1051734 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| || || || |||||||| || || || ||||||||||||||| Sbjct 1051735 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1051785 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||| ||| || || || || || || || | Sbjct 1051785 GCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1051844 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||||||||| |||| || || | |||||| || | ||| Sbjct 1051845 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1051904 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669 | ||| || ||||| || || || | || | | ||||| || ||| || Sbjct 1051905 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CC 1051962 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| || || || |||||||| || || || ||||||||||||||| Sbjct 1051963 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052013 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||| ||| || || || || || || || | Sbjct 1052013 GCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1052072 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||||||||| |||| || || | |||||| || | ||| Sbjct 1052073 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1052132 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669 | ||| || ||||| || || || | || | | ||||| || ||| || Sbjct 1052133 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CC 1052190 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| || || || |||||||| || || || ||||||||||||||| Sbjct 1052191 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052241 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||| ||| || || || || || || || | Sbjct 1052374 GCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1052433 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||||||||| |||| || || | |||||| || | ||| Sbjct 1052434 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1052493 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669 | ||| || ||||| || || || | || | | ||||| || ||| || Sbjct 1052494 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CC 1052551 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| || || || |||||||| || || || ||||||||||||||| Sbjct 1052552 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052602 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | |||||| |||| |||| ||| || || || || || || || | Sbjct 1052602 GCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1052661 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||||||||| |||| || || | |||||| || | ||| Sbjct 1052662 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1052721 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCC 39669 | ||| || ||||| || || || | || | | ||||| || ||| || Sbjct 1052722 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCT--CC 1052779 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| || || || |||||||| || || || ||||||||||||||| Sbjct 1052780 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347231700022109