Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq173 123 1e-22 seq158 113 2e-19 >seq173 Length=1059392 Score = 123 bits (136), Expect = 1e-22 Identities = 339/516 (66%), Gaps = 5/516 (1%) Strand=Plus/Plus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||| |||||| | |||||| | | | | ||||| | || ||| Sbjct 163884 AACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGCAA 163943 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 ||| | ||| | | ||| | | ||| | ||| || ||| |||||| | | Sbjct 163944 TCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAATG 164003 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || || ||||| || | ||| |||| ||||| ||||| || |||||||| || Sbjct 164004 GTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGTACTG 164063 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAAT 451329 ||||| ||||| || || || || | | |||| | | | || || |||| || || Sbjct 164064 ACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCCACACTGTCACCAATGCTGTGAT 164122 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 || || || || ||||||||||| | || || || || || || |||||||| || Sbjct 164123 CACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTGTGAT 164182 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||| ||| | || || || ||||||| || ||||| ||||| ||||| | || ||||| Sbjct 164183 TGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTTATGG 164242 Query 451450 ACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 ||| ||| | || | ||| | | | || | |||||| | |||||||| Sbjct 164243 CTTAGATAAAGC---AGGTCAGGGAGAGCGACACGTCCTAATCTTTGATCTGGGTGGAGG 164299 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 || |||| || |||| | || || || ||| | ||||| || ||||| || Sbjct 164300 CACATTTGATGTGTCCATACTGACCATAGATGACGGGATTTTTGAGGTGAAGGCCACGGC 164359 Query 451570 TGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 164360 TGGGGACACGCACCTGGGTGGGGAGGACTTTGACAA 164395 >seq158 Length=11426268 Score = 113 bits (124), Expect = 2e-19 Identities = 237/353 (67%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 || ||||| || || || || || |||| || ||| || || | ||||| ||||| Sbjct 5577324 CAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTATCCAGAGGAGGTGTCATCCGTGGTT 5577383 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||| | ||||| |||||| || |||| | ||||| |||| | Sbjct 5577384 TTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGAT 5577443 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || ||| ||||||||||||| | || | || || || |||||||| ||| | Sbjct 5577444 GTCACAGTACCCACTTATTTCAATGACTCTCAGCATCAGGCTACCAAAGATGCTGGAACT 5577503 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | || || ||| |||| |||||||| || || || |||||| | || || Sbjct 5577504 ATTGCTGGTCTCAAAGTACTTAGAATCATTAATGAGCCAACTGCTGCTGCTATTGCTAAT 5577563 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| | ||| | || |||| |||| | | | ||||| || ||||| Sbjct 5577564 GGCTTAG---ACGAAAAGGTTGGAGCTGAAAGAAATGTGCTGATCTTTGACTTGGGTGGT 5577620 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || ||| |||| || ||| | ||||| ||||| | ||||| || || Sbjct 5577621 GGCACTTTTGATGTGTCAACCCTTACTATTGAGGATGGAATCTTTGATGTCAA 5577673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974893850595884