Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq158 205 7e-47 seq173 131 1e-24 seq557 102 6e-16 seq780 100 2e-15 seq476 98.7 8e-15 >seq158 Length=11426268 Score = 205 bits (226), Expect = 7e-47 Identities = 730/1133 (64%), Gaps = 35/1133 (3%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||| ||| || ||||||||||| | |||||| |||| |||||| Sbjct 5578481 TTATCCACAGCAGACACATCAAGGATTCCATTGGCATCAATATCAAAAGTGATTTCAATC 5578422 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 517367 ||||| || || | | ||||| || || ||| | || || || ||| | || | Sbjct 5578421 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 5578364 Query 517368 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 517427 | ||||| || || | || ||||| || ||| || || || ||| || | Sbjct 5578363 TGTTATCCTTGGTCATGGCACGCTCACCATCATAAACCTGAATGAGCACACCAGGCTGGT 5578304 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487 | || || || || || || | | | ||| ||||| || || || | | | Sbjct 5578303 TGTCGGAGTAGGTAGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGCGCTTGA 5578244 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | ||||||| | ||||| || |||| | | ||||||||||| | Sbjct 5578243 TGAGGATGGTCATGACTCCACCAGCAGTTTTGATTC-----------GGAGTGACATCCA 5578195 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 ||| | | | ||||| |||||| | | ||| | ||| ||||| || | || Sbjct 5578194 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 5578135 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| |||||||| |||||||| || | | | ||| |||| ||| ||||||| Sbjct 5578134 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCCCATTGA 5578075 Query 517668 AAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | ||||||| ||| | | | || ||||| | ||| ||||| || | ||| Sbjct 5578074 AGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGGTTGAGCCTCCCACCAGGACA 5578016 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 || ||||| | ||| || || || ||||||| |||| | |||| || || || || Sbjct 5578015 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 5577956 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | | |||| ||| | | | |||||| ||| || | |||| || | | Sbjct 5577955 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAATAGAGGTA 5577896 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 | | || |||||||| | | ||||||| ||||| | || || ||||| Sbjct 5577895 TAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAGAG 5577836 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGA 517962 || | || |||||||| ||||| || || | || | || | || || | || Sbjct 5577835 AGAGTGCGCTTAGCACGCTCACAAGCAGTGCAGAGGCGACGGACAGCCCTCTTGTTCTCG 5577776 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA-- 518020 |||| || | || | |||| |||||| ||| ||| | | ||| | | || Sbjct 5577775 CTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCTGCAATAAA--ATGGTTGACGATT 5577722 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| || || || || || | |||| ||| | |||| | | || | || Sbjct 5577721 CGGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTCCGGCAGTAGATTTGACATCAAAG 5577662 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTT---ACATCATGGGTTCCACCACCCATATCAAAA 518137 | |||||| |||| || ||| ||| |||||| || |||||||||| ||||| Sbjct 5577661 ATTCCATCCTCAATAGT---AAGGGTTGACACATCAAAAGTGCCACCACCCAAGTCAAAG 5577605 Query 518138 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || || ||||| |||| | |||| || | |||| |||| |||||||||| Sbjct 5577604 ATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTAAGCCATTAGCAATAGCAGCAGCA 5577545 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| |||||||| ||||| | || || ||||||||||| |||| |||||||| || Sbjct 5577544 GTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAGCAATAGTTCCAGCATCTTTGGTA 5577485 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 || || || || || || ||||| | || || || | | | |||| || || Sbjct 5577484 GCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTGTGACATCAGCATTGGTAACAGTC 5577425 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGA 518370 || |||| || || ||| |||| | ||| || | |||| || ||||| Sbjct 5577424 TTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTGTCAAAACCACGGATGA 5577372 >seq173 Length=1059392 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 518165 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 164311 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 164252 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 164251 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 164194 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 164193 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 164134 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 | || || || || || |||| || || | || | | |||| || || | | Sbjct 164133 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 164074 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTT 518404 |||| ||| | | | ||| || || |||| || ||| | | |||| | || | Sbjct 164073 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGGTAGAAA-GCTTTTTTCTCCCCT 164015 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 | || || || | | || || || |||| || |||| ||| ||||| | Sbjct 164014 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 163955 Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 163954 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 163895 Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 || | ||| || |||||| || || | || | ||||| ||||| || || || | Sbjct 163894 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 163835 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || || || | ||||| || || ||||| || || || || || || || Sbjct 163834 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 163775 Query 518645 ATTTCAACTTTACC 518658 || || || || || Sbjct 163774 ATCTCCACCTTGCC 163761 >seq557 Length=3666638 Score = 102 bits (112), Expect = 6e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 1175504 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1175563 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 1175564 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1175623 Query 367118 G 367118 | Sbjct 1175624 G 1175624 >seq780 Length=1394479 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 248410 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 248469 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||||||||| | || || ||||| || |||||||||||| | | |||||| | Sbjct 248470 GTGGTTGGAAGAGACAAATACGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 248529 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 248530 GAAGCTTCTCATAAA 248544 >seq476 Length=2725381 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 1917407 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 1917348 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 1917347 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 1917288 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 1917287 GCGGGTACTGTGACCACAGCAT 1917266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779206020444538