Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq158 205 7e-47
seq173 131 1e-24
seq557 102 6e-16
seq780 100 2e-15
seq476 98.7 8e-15
>seq158
Length=11426268
Score = 205 bits (226), Expect = 7e-47
Identities = 730/1133 (64%), Gaps = 35/1133 (3%)
Strand=Plus/Minus
Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309
||||| | |||| ||||| ||| || ||||||||||| | |||||| |||| ||||||
Sbjct 5578481 TTATCCACAGCAGACACATCAAGGATTCCATTGGCATCAATATCAAAAGTGATTTCAATC 5578422
Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 517367
||||| || || | | ||||| || || ||| | || || || ||| | || |
Sbjct 5578421 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 5578364
Query 517368 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 517427
| ||||| || || | || ||||| || ||| || || || ||| || |
Sbjct 5578363 TGTTATCCTTGGTCATGGCACGCTCACCATCATAAACCTGAATGAGCACACCAGGCTGGT 5578304
Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487
| || || || || || || | | | ||| ||||| || || || | | |
Sbjct 5578303 TGTCGGAGTAGGTAGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGCGCTTGA 5578244
Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547
| | ||||||| | ||||| || |||| | | ||||||||||| |
Sbjct 5578243 TGAGGATGGTCATGACTCCACCAGCAGTTTTGATTC-----------GGAGTGACATCCA 5578195
Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607
||| | | | ||||| |||||| | | ||| | ||| ||||| || | ||
Sbjct 5578194 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 5578135
Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667
| |||||||| |||||||| |||||||| || | | | ||| |||| ||| |||||||
Sbjct 5578134 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCCCATTGA 5578075
Query 517668 AAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACA 517726
| || | ||||||| ||| | | | || ||||| | ||| ||||| || | |||
Sbjct 5578074 AGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGGTTGAGCCTCCCACCAGGACA 5578016
Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786
|| ||||| | ||| || || || ||||||| |||| | |||| || || || ||
Sbjct 5578015 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 5577956
Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846
|| | | |||| ||| | | | |||||| ||| || | |||| || | |
Sbjct 5577955 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAATAGAGGTA 5577896
Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906
| | || |||||||| | | ||||||| ||||| | || || |||||
Sbjct 5577895 TAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAGAG 5577836
Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGA 517962
|| | || |||||||| ||||| || || | || | || | || || | ||
Sbjct 5577835 AGAGTGCGCTTAGCACGCTCACAAGCAGTGCAGAGGCGACGGACAGCCCTCTTGTTCTCG 5577776
Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA-- 518020
|||| || | || | |||| |||||| ||| ||| | | ||| | | ||
Sbjct 5577775 CTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCTGCAATAAA--ATGGTTGACGATT 5577722
Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080
|| || ||||| || || || || || | |||| ||| | |||| | | || | ||
Sbjct 5577721 CGGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTCCGGCAGTAGATTTGACATCAAAG 5577662
Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTT---ACATCATGGGTTCCACCACCCATATCAAAA 518137
| |||||| |||| || ||| ||| |||||| || |||||||||| |||||
Sbjct 5577661 ATTCCATCCTCAATAGT---AAGGGTTGACACATCAAAAGTGCCACCACCCAAGTCAAAG 5577605
Query 518138 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197
|| || ||||| |||| | |||| || | |||| |||| ||||||||||
Sbjct 5577604 ATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTAAGCCATTAGCAATAGCAGCAGCA 5577545
Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257
||||| |||||||| ||||| | || || ||||||||||| |||| |||||||| ||
Sbjct 5577544 GTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAGCAATAGTTCCAGCATCTTTGGTA 5577485
Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317
|| || || || || || ||||| | || || || | | | |||| || ||
Sbjct 5577484 GCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTGTGACATCAGCATTGGTAACAGTC 5577425
Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGA 518370
|| |||| || || ||| |||| | ||| || | |||| || |||||
Sbjct 5577424 TTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTGTCAAAACCACGGATGA 5577372
>seq173
Length=1059392
Score = 131 bits (144), Expect = 1e-24
Identities = 366/554 (66%), Gaps = 6/554 (1%)
Strand=Plus/Minus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 518165
|||||| || || ||||||| |||||| || || || | || | || || | || |
Sbjct 164311 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 164252
Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225
|| | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || |
Sbjct 164251 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 164194
Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285
| ||||| ||||| |||||||| || ||||| || | || || || || ||||| |
Sbjct 164193 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 164134
Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345
| || || || || || |||| || || | || | | |||| || || | |
Sbjct 164133 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 164074
Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTT 518404
|||| ||| | | | ||| || || |||| || ||| | | |||| | || |
Sbjct 164073 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGGTAGAAA-GCTTTTTTCTCCCCT 164015
Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464
| || || || | | || || || |||| || |||| ||| ||||| |
Sbjct 164014 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 163955
Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524
|||||||||||||| || | |||||||| | || ||||| | ||||| ||||||
Sbjct 163954 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 163895
Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584
|| | ||| || |||||| || || | || | ||||| ||||| || || || |
Sbjct 163894 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 163835
Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644
|| || || || || | ||||| || || ||||| || || || || || || ||
Sbjct 163834 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 163775
Query 518645 ATTTCAACTTTACC 518658
|| || || || ||
Sbjct 163774 ATCTCCACCTTGCC 163761
>seq557
Length=3666638
Score = 102 bits (112), Expect = 6e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057
|||| || ||||| ||||| ||||| ||||||||| | |||||| | || |||||||
Sbjct 1175504 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1175563
Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117
|||| ||||| ||| | || ||| ||||| || || ||||||||||| || |||||||
Sbjct 1175564 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1175623
Query 367118 G 367118
|
Sbjct 1175624 G 1175624
>seq780
Length=1394479
Score = 100 bits (110), Expect = 2e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| |
Sbjct 248410 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 248469
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||||||||| | || || ||||| || |||||||||||| | | |||||| |
Sbjct 248470 GTGGTTGGAAGAGACAAATACGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 248529
Query 635561 GATGCTAGTCCTAAA 635575
|| ||| || ||||
Sbjct 248530 GAAGCTTCTCATAAA 248544
>seq476
Length=2725381
Score = 98.7 bits (108), Expect = 8e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 1917407 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 1917348
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 1917347 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 1917288
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| || || || | || ||||
Sbjct 1917287 GCGGGTACTGTGACCACAGCAT 1917266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779206020444538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |