Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3709 95.1 1e-14 seq8899 93.3 5e-14 seq1379 93.3 5e-14 seq1280 93.3 5e-14 seq233 93.3 5e-14 seq2401 82.4 9e-11 >seq3709 Length=210978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 42580 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 42521 Query 136777 GGGAACAGCTTTTA 136790 || || |||||| Sbjct 42520 CGGGCCA-CTTTTA 42508 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 46008 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 45950 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 56731 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGACCCCCGT 56673 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 205322 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 205380 >seq8899 Length=5643 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 585 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 643 >seq1379 Length=1045014 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 881503 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 881445 >seq1280 Length=1139451 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 105299 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 105357 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||| Sbjct 135154 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGCGGGTTCGATCCCCGT 135096 >seq233 Length=9406390 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 9217221 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9217279 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 9365874 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9365816 >seq2401 Length=178734 Score = 82.4 bits (90), Expect = 9e-11 Identities = 180/266 (68%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 158479 TATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCG 158538 || ||| | || || || ||||| || ||||||| || |||| || | || || || Sbjct 96488 TACGGGAGAGTAGCTCCACGTTCAGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCT 96547 Query 158539 GGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGG---A 158595 || |||| ||| |||||||| ||| | || || || || || ||| ||| | Sbjct 96548 GGTGTCACAGATGAAGATTATACAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAA 96607 Query 158596 GACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAAC-GTTG 158654 || ||| ||||| || || ||||||||||| || |||||||| || |||| | | Sbjct 96608 GAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACAGATT 96664 Query 158655 TGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAGGGGTTCGGGTGG 158714 | || ||| || |||||| || | | | || || || || ||||| || || || Sbjct 96665 TTCCAC-CCAGAAATGGAGGAAGTTCAAGTGTTAGATGACACTGAAAGGGGCTCAGGAGG 96723 Query 158715 ATTTGGTTCTACTGGCAATTAGAAAA 158740 |||||||| ||||| || | |||| Sbjct 96724 TTTTGGTTCCACTGGAAAGAACAAAA 96749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588736191059400