Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq99 156 9e-33 seq469 136 9e-27 seq119 109 1e-18 seq164 96.9 8e-15 >seq99 Length=2554289 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 1822282 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1822341 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || || || ||||| ||||| |||||||| || || || Sbjct 1822342 AGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 1822401 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| | ||||| || ||||| | ||||| Sbjct 1822402 ATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTG 1822461 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || ||||| || || ||||| | ||||||| Sbjct 1822462 CCCGTCAAGGTCTTCACGAAGATCTGCATTT 1822492 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 1822054 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1822113 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || || || ||||| ||||| |||||||| || || || Sbjct 1822114 AGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 1822173 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| | ||||| || ||||| | ||||| Sbjct 1822174 ATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTG 1822233 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 1822234 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 1816889 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1816948 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| ||||| || || || || Sbjct 1816949 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 1817008 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 1817009 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1817065 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | ||||||| Sbjct 1817066 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTT 1817099 >seq469 Length=2995260 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 1051563 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1051622 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 1051623 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 1051682 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 1051683 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 1051739 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 1051740 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 1051791 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1051850 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 1051851 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 1051910 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 1051911 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 1051967 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 1051968 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 1052019 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1052078 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 1052079 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 1052138 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 1052139 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 1052195 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 1052196 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 1052380 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1052439 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 1052440 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 1052499 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 1052500 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 1052556 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 1052557 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 1052608 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1052667 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 1052668 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 1052727 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 1052728 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 1052784 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 1052785 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || || || ||||| || | || || | ||||||||| ||||| Sbjct 1051353 GTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 1051412 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | | || |||||||| || ||||| || |||||||| || || Sbjct 1051413 TTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 1051472 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||||||||| |||||||| ||| ||||| || ||||| | ||||| || Sbjct 1051473 CGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTACC 1051529 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| | ||||| Sbjct 1051530 CGTCAAGGTCTTCACGAAGATCTGCAT 1051556 >seq119 Length=227305 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| ||||||||||| || | |||| | ||||| || ||||| Sbjct 86656 GTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTG 86715 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || | || || || || | || ||||| || || ||||| || |||||||| ||||| Sbjct 86716 TTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 86775 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||| ||||||| ||| || || |||||||| | ||||| || Sbjct 86776 AGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 86832 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || || ||||| Sbjct 86833 CATCAGGGTCTTCACAAAGACCTGCAT 86859 >seq164 Length=6526486 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| |||| || |||||| | ||||| | ||||| || ||||| || || Sbjct 3962303 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 3962362 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 | ||| || || | || ||||| || || ||||| || ||||||| ||| | ||| Sbjct 3962363 GTGAAAATGAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 3962422 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||| | ||||||| | || || || ||||| | ||||| ||||||| || Sbjct 3962423 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 3962482 Query 195124 TTTACGAA 195131 || || || Sbjct 3962483 TTCACAAA 3962490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109018567215491