Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq469 140 2e-28 seq119 105 4e-18 seq615 96.9 2e-15 seq99 87.8 1e-12 seq205 86.0 4e-12 seq89 86.0 4e-12 seq164 82.4 5e-11 >seq469 Length=2995260 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| || | || |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 1051330 CCTCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1051389 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || | | ||||||||| | || Sbjct 1051390 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1051449 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | |||| || ||| || Sbjct 1051450 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1051509 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || ||||| | |||||||| ||||||||||| Sbjct 1051510 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1051576 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1051635 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 1051636 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1051695 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 1051696 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 1051755 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 1051756 CCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1051804 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1051863 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 1051864 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1051923 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 1051924 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 1051983 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 1051984 CCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1052032 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1052091 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 1052092 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1052151 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 1052152 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 1052211 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 1052212 CCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1052393 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1052452 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 1052453 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1052512 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 1052513 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 1052572 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 1052573 CCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1052621 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1052680 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 1052681 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1052740 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 1052741 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 1052800 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 1052801 CCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829 >seq119 Length=227305 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||||| || ||||| || | | || |||| ||| Sbjct 86651 ACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCC 86710 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| | ||||| || || | |||||||| | || | ||||||||||| Sbjct 86711 AGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 86770 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | | |||| || |||||| || | ||| ||||| | Sbjct 86771 ATTTTAGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCT 86828 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| | || ||||||||||||| |||||| Sbjct 86829 TGCCCATCAGGGTCTTCACAAAGACCTGCAT 86859 >seq615 Length=2269971 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 34798 GAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTC 34857 |||| || ||||| || || | | |||| || |||||||| || |||| || || | Sbjct 1647511 GAATATTGTAGTCTGACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGAC 1647452 Query 34858 GTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTA--T 34915 | ||||| || | || | ||||||||||| || || |||||| || || | Sbjct 1647451 GCTGCTGATCAGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGAC--ATTCTCAGT 1647394 Query 34916 CGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGAT 34975 | |||| || |||||| |||| ||| ||||| || ||||| || |||||||||||||| Sbjct 1647393 GGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 1647334 Query 34976 CTGCAT 34981 |||||| Sbjct 1647333 CTGCAT 1647328 >seq99 Length=2554289 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || |||| |||||||| || || || || Sbjct 1816907 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 1816966 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | |||||||| || ||||| || || || Sbjct 1816967 ATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCAC--AT 1817024 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || ||||| | ||||||| Sbjct 1817025 TCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCA 1817084 Query 34969 CAAAGATCTGCATATT--CGTAGACTTG 34994 | ||||||||||| || | |||| ||| Sbjct 1817085 CGAAGATCTGCATTTTGACCTAGAGTTG 1817112 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| || || ||| Sbjct 1822036 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822095 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || || || || || || |||||||| | || Sbjct 1822096 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822155 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || ||| | || | || | | ||| || Sbjct 1822156 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1822215 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 1822216 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 1822263 Score = 82.4 bits (90), Expect = 5e-11 Identities = 164/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| || || ||| Sbjct 1822264 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822323 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || || || || || || |||||||| | || Sbjct 1822324 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822383 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || ||| | || | || | | ||| || Sbjct 1822384 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1822443 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT--CGTAGACT 34992 || | ||| ||||| || ||||| | |||||||| ||||||||||| || | |||| | Sbjct 1822444 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTGACCTAGAGT 1822503 Query 34993 TG 34994 || Sbjct 1822504 TG 1822505 >seq205 Length=8045950 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||||||||| || ||||| || || | |||||||| |||| | ||||||||| Sbjct 434740 TCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTG 434799 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || | || |||||| || || | | |||| || |||||| ||| ||| | Sbjct 434800 TCTTGGGTTTTAGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCAAC-CCGAGGGTGA 434856 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || ||||| || |||||||||||||||||||| Sbjct 434857 TGGCCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 434893 >seq89 Length=3644534 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || ||||| || || | || | ||||||||||||| || || || Sbjct 1710815 TCCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAAA 1710756 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 | || || |||||||| | || | ||||||||||| | || || | |||| || Sbjct 1710755 CTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGAC--AT 1710698 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| || |||||| |||| ||| | ||| || ||| | || |||||| Sbjct 1710697 TCTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTTCA 1710638 Query 34969 CAAAGATCTG 34978 |||||| ||| Sbjct 1710637 CAAAGACCTG 1710628 >seq164 Length=6526486 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||| | || || || || | || |||| ||||||||||| || | || Sbjct 3962309 TCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCCGTGAAA 3962368 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| || | |||||| || Sbjct 3962369 ATGAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTGAC--AT 3962426 Query 34911 GCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | | ||| || |||||| |||| ||| || || || || || || ||||||| Sbjct 3962427 TCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTCTTCA 3962486 Query 34969 CAAAGATCTGCAT 34981 |||||||||| || Sbjct 3962487 CAAAGATCTGTAT 3962499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324504725837544