Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq476 116 3e-20 seq875 109 4e-18 seq158 109 4e-18 seq659 86.0 5e-11 seq31 86.0 5e-11 >seq476 Length=2725381 Score = 116 bits (128), Expect = 3e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || || |||||||| || ||||| || || Sbjct 1917259 GTTACCAATGCTGTGGTCACAGTACCCGCTTACTTCAATGACTCTCAGCGTCAGGCGACC 1917318 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 1917319 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 1917378 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 1917379 GCTGCTATTGCTTATGG 1917395 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || ||||| || | ||||| | ||| | | ||| ||||||||||| || ||| Sbjct 1918713 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 1918772 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||||||||| ||||||||||| || | |||||| || Sbjct 1918773 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 1918832 Query 552588 GCTTGTGATAA 552598 ||| ||||| Sbjct 1918833 GCTGTGGATAA 1918843 >seq875 Length=953430 Score = 109 bits (120), Expect = 4e-18 Identities = 320/480 (67%), Gaps = 26/480 (5%) Strand=Plus/Plus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || |||||||| ||| | ||||| ||| || | |||| |||||| Sbjct 929591 ATGGAAAAGTAGAGATTATTGCTAATTACCAAGGCAACTTTACCAGTCCAAGTTATGTAG 929650 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163 ||||||| ||| |||||| | | ||| | | || | |||| | ||| | | Sbjct 929651 CTTTCAC--AAAGTGAACACCTGATCAATGAAGTTTCTAAGAACCAAGAGGC-GGTGAAC 929707 Query 550164 CT-ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || |||||||| || ||||||||||| | | ||||| | | ||| ||||| | || Sbjct 929708 CTCACCAATACCATCTTTGATGCTAAGAGGCTGATTGGTTGCAAGTTTGATGATGCCACA 929767 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT--- 550279 |||||| |||| |||||||| |||||||||||| | || || ||||| ||| Sbjct 929768 GTTCAGTCAGA-ATGAAGCACTGGCCTTTCCAAGTGATTTGTGAAAAGGGAAAGCCTAAA 929826 Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCAT 550337 | ||| || | || |||| ||| || ||||| ||||| | | || | Sbjct 929827 GAAATT---GCAAAATATAAAGG-------AAATAATTTTTTCCCCAGAGGAGGTGTCTT 929876 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGC--CAGTGCTTTTGTTGGTCAAGAAGTTAC 550395 | |||||| ||| | | |||||| | | || ||| || || | || || ||| || Sbjct 929877 CCATGGTTCTAA-GCAGATGAAAGAGATTGCTGAAGT-CTGTT-TAGGGAAAAAAGGTAG 929933 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| |||| ||||| ||| | || || ||||| ||||| |||| || || || || Sbjct 929934 AAATGCAATAATTACTGTTCCAACCTACTTAAATGATTCACAGTGTCAGGCCACCAAGGA 929993 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || | || ||| |||||| | || | || || ||||| | |||||| || || Sbjct 929994 AGCAGAGATCATCACTGATCTTAATATCCTGAG-ATCATTAATGAGCTTACTGCAGCAGC 930052 >seq158 Length=11426268 Score = 109 bits (120), Expect = 4e-18 Identities = 332/507 (65%), Gaps = 7/507 (1%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| | | | || ||||| || | ||||| |||||| || ||| | Sbjct 5577062 TGTGTGGGTGTCTTCTAGCACGGGAAAGTAGAGGTACTTGCCGGTGATCAGGGAAACCCA 5577121 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-ATTTA--GTTGGTGATGCAGCA 550141 || | ||| | |||| ||||||| | | |||| ||| | ||| |||||| ||| Sbjct 5577122 ACCGCCCCAAGCTGTGTTGCTTTCACCCATATTGAATGATTGATCGTT--TGATGCTGCA 5577179 Query 550142 AAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 || | |||| | || || |||| || |||||||||| ||| | | |||||| Sbjct 5577180 AAGAACCAAGTTGCGATGAACCCCACCAGCACCGTTTTTGATGCCAAATGCCTCATTGGA 5577239 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 |||| ||| || || | ||| || | |||| |||||||||| | ||| | || Sbjct 5577240 TGAAGATTTTATTATGCTGTTGTCCAATCTGATACGAAGCATTGGTCCTTCATGGTGGTG 5577299 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 |||| | || | ||| | | | | | | | ||| ||| || | Sbjct 5577300 AATGACGCAGGCAGGCCTAAGGTCCAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTAT 5577359 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 ||||| | | ||||| ||||||| | || ||| | |||| || || | || Sbjct 5577360 CCAGAGGAGGTGTCATCCGTGGTTTTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTT 5577419 Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || |||| ||||| |||| | | || ||||| | ||||| |||||||| || | Sbjct 5577420 GGG-AAGACTGTTACCAATGCTGATGTCACAGTACCCACTTATTTCAATGACTCTCAGCA 5577478 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| ||||| |||||||||||| ||||||||| || || || ||| | || || ||||| Sbjct 5577479 TCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAAAGTACTTAGAATCATTAATGA 5577538 Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||||||||| |||| |||| Sbjct 5577539 GCCAACTGCTGCTGCTATTGCTAATGG 5577565 >seq659 Length=6445305 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||||||||||| | ||| | | |||||| ||||| || || ||||| || ||||| Sbjct 953527 AATATTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 953468 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 |||||| ||||||||||||||| Sbjct 953467 TTGCTGGTCAGGAGGAATTCCT 953446 >seq31 Length=11653817 Score = 86.0 bits (94), Expect = 5e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 552488 TGGTACTTTTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 ||||| |||| | |||| || |||||||| || ||||||||||| || || ||||||| Sbjct 10988990 TGGTA--TTTATTCTAGATTGGAATTCCTCCAGCCCCTCGTGGAGTCCCTCAGATTGAAG 10988933 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||| || || || ||||||||||| ||| || |||| |||| Sbjct 10988932 TTACATTTGACATTGATGCCAATGGGATTGTGCATGTTTCTGC 10988890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027573392855770