Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq476 116 3e-20
seq875 109 4e-18
seq158 109 4e-18
seq659 86.0 5e-11
seq31 86.0 5e-11
>seq476
Length=2725381
Score = 116 bits (128), Expect = 3e-20
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | || ||||| || || || |||||||| || ||||| || ||
Sbjct 1917259 GTTACCAATGCTGTGGTCACAGTACCCGCTTACTTCAATGACTCTCAGCGTCAGGCGACC 1917318
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||||||| || ||||| ||| | || |||||||| || ||||||
Sbjct 1917319 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 1917378
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 1917379 GCTGCTATTGCTTATGG 1917395
Score = 93.3 bits (102), Expect = 3e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527
|| || ||||| || | ||||| | ||| | | ||| ||||||||||| || |||
Sbjct 1918713 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 1918772
Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587
|| || || || |||||||| ||||||||||| ||||||||||| || | |||||| ||
Sbjct 1918773 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 1918832
Query 552588 GCTTGTGATAA 552598
||| |||||
Sbjct 1918833 GCTGTGGATAA 1918843
>seq875
Length=953430
Score = 109 bits (120), Expect = 4e-18
Identities = 320/480 (67%), Gaps = 26/480 (5%)
Strand=Plus/Plus
Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103
|||| ||||| || |||||||| ||| | ||||| ||| || | |||| ||||||
Sbjct 929591 ATGGAAAAGTAGAGATTATTGCTAATTACCAAGGCAACTTTACCAGTCCAAGTTATGTAG 929650
Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163
||||||| ||| |||||| | | ||| | | || | |||| | ||| | |
Sbjct 929651 CTTTCAC--AAAGTGAACACCTGATCAATGAAGTTTCTAAGAACCAAGAGGC-GGTGAAC 929707
Query 550164 CT-ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222
|| |||||||| || ||||||||||| | | ||||| | | ||| ||||| | ||
Sbjct 929708 CTCACCAATACCATCTTTGATGCTAAGAGGCTGATTGGTTGCAAGTTTGATGATGCCACA 929767
Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT--- 550279
|||||| |||| |||||||| |||||||||||| | || || ||||| |||
Sbjct 929768 GTTCAGTCAGA-ATGAAGCACTGGCCTTTCCAAGTGATTTGTGAAAAGGGAAAGCCTAAA 929826
Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCAT 550337
| ||| || | || |||| ||| || ||||| ||||| | | || |
Sbjct 929827 GAAATT---GCAAAATATAAAGG-------AAATAATTTTTTCCCCAGAGGAGGTGTCTT 929876
Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGC--CAGTGCTTTTGTTGGTCAAGAAGTTAC 550395
| |||||| ||| | | |||||| | | || ||| || || | || || ||| ||
Sbjct 929877 CCATGGTTCTAA-GCAGATGAAAGAGATTGCTGAAGT-CTGTT-TAGGGAAAAAAGGTAG 929933
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
||||| |||| ||||| ||| | || || ||||| ||||| |||| || || || ||
Sbjct 929934 AAATGCAATAATTACTGTTCCAACCTACTTAAATGATTCACAGTGTCAGGCCACCAAGGA 929993
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
|| | || ||| |||||| | || | || || ||||| | |||||| || ||
Sbjct 929994 AGCAGAGATCATCACTGATCTTAATATCCTGAG-ATCATTAATGAGCTTACTGCAGCAGC 930052
>seq158
Length=11426268
Score = 109 bits (120), Expect = 4e-18
Identities = 332/507 (65%), Gaps = 7/507 (1%)
Strand=Plus/Plus
Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084
||||| ||||| | | | || ||||| || | ||||| |||||| || ||| |
Sbjct 5577062 TGTGTGGGTGTCTTCTAGCACGGGAAAGTAGAGGTACTTGCCGGTGATCAGGGAAACCCA 5577121
Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-ATTTA--GTTGGTGATGCAGCA 550141
|| | ||| | |||| ||||||| | | |||| ||| | ||| |||||| |||
Sbjct 5577122 ACCGCCCCAAGCTGTGTTGCTTTCACCCATATTGAATGATTGATCGTT--TGATGCTGCA 5577179
Query 550142 AAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201
|| | |||| | || || |||| || |||||||||| ||| | | ||||||
Sbjct 5577180 AAGAACCAAGTTGCGATGAACCCCACCAGCACCGTTTTTGATGCCAAATGCCTCATTGGA 5577239
Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261
|||| ||| || || | ||| || | |||| |||||||||| | ||| | ||
Sbjct 5577240 TGAAGATTTTATTATGCTGTTGTCCAATCTGATACGAAGCATTGGTCCTTCATGGTGGTG 5577299
Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321
|||| | || | ||| | | | | | | | ||| ||| || |
Sbjct 5577300 AATGACGCAGGCAGGCCTAAGGTCCAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTAT 5577359
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
||||| | | ||||| ||||||| | || ||| | |||| || || | ||
Sbjct 5577360 CCAGAGGAGGTGTCATCCGTGGTTTTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTT 5577419
Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440
|| |||| ||||| |||| | | || ||||| | ||||| |||||||| || |
Sbjct 5577420 GGG-AAGACTGTTACCAATGCTGATGTCACAGTACCCACTTATTTCAATGACTCTCAGCA 5577478
Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500
||| ||||| |||||||||||| ||||||||| || || || ||| | || || |||||
Sbjct 5577479 TCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAAAGTACTTAGAATCATTAATGA 5577538
Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527
|| ||||||||||| |||| ||||
Sbjct 5577539 GCCAACTGCTGCTGCTATTGCTAATGG 5577565
>seq659
Length=6445305
Score = 86.0 bits (94), Expect = 5e-11
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
|||||||||||||| | ||| | | |||||| ||||| || || ||||| || |||||
Sbjct 953527 AATATTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 953468
Query 563352 TTGCTGATCAGGAGGAATTCCT 563373
|||||| |||||||||||||||
Sbjct 953467 TTGCTGGTCAGGAGGAATTCCT 953446
>seq31
Length=11653817
Score = 86.0 bits (94), Expect = 5e-11
Identities = 82/103 (80%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 552488 TGGTACTTTTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546
||||| |||| | |||| || |||||||| || ||||||||||| || || |||||||
Sbjct 10988990 TGGTA--TTTATTCTAGATTGGAATTCCTCCAGCCCCTCGTGGAGTCCCTCAGATTGAAG 10988933
Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
|||| || || || ||||||||||| ||| || |||| ||||
Sbjct 10988932 TTACATTTGACATTGATGCCAATGGGATTGTGCATGTTTCTGC 10988890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027573392855770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |