Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq251 318 5e-82
seq25 143 2e-29
seq2246 95.1 1e-14
seq91 87.8 1e-12
>seq251
Length=3596318
Score = 318 bits (352), Expect = 5e-82
Identities = 484/687 (70%), Gaps = 4/687 (1%)
Strand=Plus/Plus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
|||||||| || || || | | ||||| | ||||| || || ||||| ||||||
Sbjct 284282 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 284340
Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
| ||| || ||||||| ||||| |||| || || || | || || |||| ||| ||
Sbjct 284341 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 284400
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
|||||||| ||||| |||||||||||||||||||| ||||| || || || ||||||||
Sbjct 284401 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 284460
Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005
|| |||| || || ||||| || || ||||| |||| |||||| ||||| || |
Sbjct 284461 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 284520
Query 30006 GGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30065
|| ||||| || || || ||| |||| | || ||| || |||||||| |||| |||
Sbjct 284521 GGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 284580
Query 30066 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30125
||| | ||||| | |||||| | |||| ||| | || ||||| || || ||
Sbjct 284581 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 284640
Query 30126 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185
|| | || || || |||| | | || ||| || || || ||||||||||||||
Sbjct 284641 TCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTG 284700
Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30245
|| | ||| || || || || |||| |||| ||| ||| ||| |||||||
Sbjct 284701 AAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCAA 284757
Query 30246 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30305
| | ||| ||| || |||||||||||||| || || ||||| || ||||| || |
Sbjct 284758 GACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 284817
Query 30306 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365
||||||||| || ||| |||||||||| ||||||| || ||||||| || || |
Sbjct 284818 GTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACG 284877
Query 30366 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACAC 30425
||||| ||||| || ||||| | | |||||| ||| ||||| || |||||
Sbjct 284878 TTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACAC 284937
Query 30426 GGACAAGACTCCCGTGCCCGTCCTGTC 30452
|||| | || |||||||| | |||
Sbjct 284938 CGACAGGGTGCCGGTGCCCGTGCAGTC 284964
>seq25
Length=14465811
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||| | ||||| || ||||||||||||||||| |||||
Sbjct 2982284 AGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 2982343
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| ||||||| |||||| ||||| || || ||||| |||| |
Sbjct 2982344 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 2982403
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || |||||| || || || ||||||||
Sbjct 2982404 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 2982447
Score = 114 bits (126), Expect = 1e-20
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || ||||||||||| || || ||||| ||||| || || ||
Sbjct 2985527 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 2985586
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
||| ||||| ||| ||| ||| ||||||| ||||||| ||| || ||||||||
Sbjct 2985587 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 2985646
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 2985647 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 2985694
>seq2246
Length=1060343
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/236 (69%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 112138
|||| |||| || || || || | || || ||||| |||| || || ||||| |
Sbjct 252848 ATGATCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTT 252907
Query 112139 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198
| | ||||| |||||| || | ||||||||||| ||||||||||| || ||||||| |
Sbjct 252908 TTAAAGGTCGATTCTTCTCTAGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAAT 252967
Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 112258
|||| || ||| |||||||| | | ||||| | || | ||||| || || |
Sbjct 252968 TCTGTTTACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCC 253027
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 112313
||| || ||||| |||| || | ||| || ||||| |||||| |||||
Sbjct 253028 TGAGT------GGGTGCCAGTGCAGGTCCCTGTTCTTGCCGATACCCATGTTCTGG 253077
>seq91
Length=16929213
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| || | || || ||||| | | ||||| |||||| || ||
Sbjct 15942614 TTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 15942673
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| |||||||||||||| ||||||| || ||||| |||
Sbjct 15942674 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGCTTACCT 15942721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408455385580529
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |