Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq2401 86.0 2e-12 >seq2401 Length=178734 Score = 86.0 bits (94), Expect = 2e-12 Identities = 187/276 (68%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| | || || ||| ||||||| | || || || || || || | | Sbjct 96474 TTCCTTCTGGGTACTACGGGAGAGTAGCTCCACGTTCAGGCTTGGCTGCAAAACACTTCA 96533 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||| | || || || ||||||||||| ||| Sbjct 96534 TAGATGTAGGAGCTGGTGTCACAGATGAAGATTATACAGGAAATGTTGGTGTTGTACTAT 96593 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 96594 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCA 96650 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||||| | | ||||||| ||| |||| | ||| ||| ||||| || Sbjct 96651 TTTGTGAA----CAGATTTTCCACCCA--GAAATGGAGGAAGTTCAAGTGTTAGATGACA 96704 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | |||||||| || | ||| ||||| || || |||| Sbjct 96705 CTGAAAGGGGCTCAGGAGGTTTTGGTTCCACTGGAA 96740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138627957350388