Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq158 140 2e-27
seq173 122 6e-22
seq476 109 4e-18
seq557 89.7 3e-12
>seq158
Length=11426268
Score = 140 bits (154), Expect = 2e-27
Identities = 449/689 (65%), Gaps = 17/689 (2%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||||||||| ||||||||||| |||| ||||| || || | | |||| ||
Sbjct 5577807 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGTCAGTATTGAGATT 5577866
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
||||| || | ||||||||| || | |||| |||||| | || |||||||||
Sbjct 5577867 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 5577926
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || || ||| || | ||| |
Sbjct 5577927 TTAAATGCTGACCTGTTCTGTGGCACCCTGGACCCTGTGGAGAAAGCTCCTCGGGATGCA 5577986
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||||| ||||| || || ||||||| ||||| || || ||||| ||||| | || ||
Sbjct 5577987 AAACTAGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGAGGCTCAACCCGTATCCCC 5578046
Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794
| || ||||| | || | | || ||||| ||| | | ||| | || | ||
Sbjct 5578047 AGGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 5578105
Query 475795 TCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATC 475854
|||||||| |||||||| ||||| || |||||||| ||||| |||||||| ||
Sbjct 5578106 CCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTTTATCTGG------ 5578159
Query 475855 AGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912
|||| || || || ||| || ||||| || || | | ||| | | |
Sbjct 5578160 AGAC--AAATCTGAA-AATGTTCAAGACTTGCTG--CTA--TTGGATGTCACTCCGAATC 5578212
Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972
|||| | ||| || | ||||| | || || | | ||||| | || || ||
Sbjct 5578213 AAAACTGCTGGTGGAGTCATGACCATCCTCATCAAGCGCAATACCACCATTCCCACTAAG 5578272
Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032
| | || || | || || || || || || | ||| ||| || | | |
Sbjct 5578273 CAGACGCAAACCTTCACTACCTACTCCGACAACCAGCCTGGTGTGCTCATTCAGGTTTAT 5578332
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092
|| ||||| | | || || ||||| ||| |||||| | || | || |||
Sbjct 5578333 GATGGTGAGCGTGCCATGACCAAGGATAACAACCTACTTGGCAAGGTTGAACTCACAGGC 5578392
Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152
||||||||||| ||| | || |||||||| |||||| | ||||||||||||||||| |||
Sbjct 5578393 ATTCCTCCTGCCCCCTGTGGCGTTCCTCAGATTGAAATCACTTTTGATATTGATGCCAAT 5578452
Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAA 476181
|| || ||| |||| ||||| |||||
Sbjct 5578453 GGAATCCTTGATGTGTCTGCTGTGGATAA 5578481
>seq173
Length=1059392
Score = 122 bits (134), Expect = 6e-22
Identities = 326/493 (66%), Gaps = 4/493 (1%)
Strand=Plus/Plus
Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442
|| || || || || || ||||| ||||| || || | || || || ||||| |
Sbjct 163761 GGCAAGGTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACCCCCAGCTATGTGGCC 163820
Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502
|| || || || || | || || || ||||| || || | || | || |||||
Sbjct 163821 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCATGAATCCA 163880
Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562
|| ||| | |||||||| ||| | ||||||| | || ||| ||||| | ||
Sbjct 163881 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTG 163940
Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622
||||| |||||| | |||||||||| | || || |||| || || || || | ||
Sbjct 163941 CAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTA 164000
Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681
| | | | || ||| || | ||| || | || || |||| ||||| |||||
Sbjct 164001 -ATGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGT 164059
Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
| | || ||||| | || || ||| | | | | || || || || |||| |
Sbjct 164060 ACTGACTAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACACTGTCACCAATGCTG 164118
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || || || ||||| ||||| ||||| ||||| || || || || || ||||| ||
Sbjct 164119 TGATCACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTG 164178
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
||||||||||| || || || | ||||| || ||||| ||||| || || ||||||
Sbjct 164179 TGATTGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTT 164238
Query 474861 ATGGTCTTGATAA 474873
|||| | |||||
Sbjct 164239 ATGGCTTAGATAA 164251
>seq476
Length=2725381
Score = 109 bits (120), Expect = 4e-18
Identities = 222/327 (68%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||||||||| ||||||||||| |||| ||||| || || | | | |||| ||
Sbjct 1917719 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 1917778
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
||||| || | ||||||||| || | |||| |||||| | || |||||||||
Sbjct 1917779 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1917838
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || || ||| ||| | ||| |
Sbjct 1917839 TTAAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCTCTTCGGGATGCG 1917898
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||||| ||||||||||| ||||||| || || | || ||||| ||||| | || ||
Sbjct 1917899 AAACTGGACAAATCACAGATCCATGACATCGTCTTGGTGGGAGGCTCAACTCGTATACCC 1917958
Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794
|| || ||||| | || | | || ||||| ||| | | ||| | || | ||
Sbjct 1917959 AAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 1918017
Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821
|||||||| |||||||| ||||| ||
Sbjct 1918018 CCCTGATGAGGCTGTTGCTTATGGTGC 1918044
Score = 102 bits (112), Expect = 5e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | ||| | || ||| ||||||||||| ||| |
Sbjct 1918713 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 1918772
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| |||||||| ||||| ||||||||||| ||||| || |||||||| ||
Sbjct 1918773 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 1918832
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 1918833 GCTGTGGATAA 1918843
>seq557
Length=3666638
Score = 89.7 bits (98), Expect = 3e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828
|||||||| || |||||||| || || || ||||| ||| || | ||||| ||||||
Sbjct 1175624 CCATCACGGCCAGCTCTACCAATCTCCTGGTAATATGATTCCATTTCCTTAGGAGCGCCA 1175565
Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887
||||| || ||| | ||||| | ||||||||| ||||||||||| || || || ||
Sbjct 1175564 TAATGAATGACTTTGCGAACATCAGCTTTATTAATGCCCATTCCAAAAGCTATGGTAGC 1175506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266781985985804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |