Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq158 140 2e-27 seq173 122 6e-22 seq476 109 4e-18 seq557 89.7 3e-12 >seq158 Length=11426268 Score = 140 bits (154), Expect = 2e-27 Identities = 449/689 (65%), Gaps = 17/689 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | |||| || Sbjct 5577807 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGTCAGTATTGAGATT 5577866 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 5577867 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 5577926 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| || | ||| | Sbjct 5577927 TTAAATGCTGACCTGTTCTGTGGCACCCTGGACCCTGTGGAGAAAGCTCCTCGGGATGCA 5577986 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || || ||||||| ||||| || || ||||| ||||| | || || Sbjct 5577987 AAACTAGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGAGGCTCAACCCGTATCCCC 5578046 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 | || ||||| | || | | || ||||| ||| | | ||| | || | || Sbjct 5578047 AGGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 5578105 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATC 475854 |||||||| |||||||| ||||| || |||||||| ||||| |||||||| || Sbjct 5578106 CCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTTTATCTGG------ 5578159 Query 475855 AGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 |||| || || || ||| || ||||| || || | | ||| | | | Sbjct 5578160 AGAC--AAATCTGAA-AATGTTCAAGACTTGCTG--CTA--TTGGATGTCACTCCGAATC 5578212 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 |||| | ||| || | ||||| | || || | | ||||| | || || || Sbjct 5578213 AAAACTGCTGGTGGAGTCATGACCATCCTCATCAAGCGCAATACCACCATTCCCACTAAG 5578272 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 | | || || | || || || || || || | ||| ||| || | | | Sbjct 5578273 CAGACGCAAACCTTCACTACCTACTCCGACAACCAGCCTGGTGTGCTCATTCAGGTTTAT 5578332 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 || ||||| | | || || ||||| ||| |||||| | || | || ||| Sbjct 5578333 GATGGTGAGCGTGCCATGACCAAGGATAACAACCTACTTGGCAAGGTTGAACTCACAGGC 5578392 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||||||||| ||| | || |||||||| |||||| | ||||||||||||||||| ||| Sbjct 5578393 ATTCCTCCTGCCCCCTGTGGCGTTCCTCAGATTGAAATCACTTTTGATATTGATGCCAAT 5578452 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAA 476181 || || ||| |||| ||||| ||||| Sbjct 5578453 GGAATCCTTGATGTGTCTGCTGTGGATAA 5578481 >seq173 Length=1059392 Score = 122 bits (134), Expect = 6e-22 Identities = 326/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 || || || || || || ||||| ||||| || || | || || || ||||| | Sbjct 163761 GGCAAGGTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACCCCCAGCTATGTGGCC 163820 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || | || || || ||||| || || | || | || ||||| Sbjct 163821 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCATGAATCCA 163880 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || Sbjct 163881 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTG 163940 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 ||||| |||||| | |||||||||| | || || |||| || || || || | || Sbjct 163941 CAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTA 164000 Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | | | || ||| || | ||| || | || || |||| ||||| ||||| Sbjct 164001 -ATGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGT 164059 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | || ||||| | || || ||| | | | | || || || || |||| | Sbjct 164060 ACTGACTAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACACTGTCACCAATGCTG 164118 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| ||||| ||||| ||||| || || || || || ||||| || Sbjct 164119 TGATCACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTG 164178 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||||||||| || || || | ||||| || ||||| ||||| || || |||||| Sbjct 164179 TGATTGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTT 164238 Query 474861 ATGGTCTTGATAA 474873 |||| | ||||| Sbjct 164239 ATGGCTTAGATAA 164251 >seq476 Length=2725381 Score = 109 bits (120), Expect = 4e-18 Identities = 222/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | | |||| || Sbjct 1917719 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 1917778 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 1917779 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1917838 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| ||| | ||| | Sbjct 1917839 TTAAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCTCTTCGGGATGCG 1917898 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||||||||| ||||||| || || | || ||||| ||||| | || || Sbjct 1917899 AAACTGGACAAATCACAGATCCATGACATCGTCTTGGTGGGAGGCTCAACTCGTATACCC 1917958 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || | | || ||||| ||| | | ||| | || | || Sbjct 1917959 AAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 1918017 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||| |||||||| ||||| || Sbjct 1918018 CCCTGATGAGGCTGTTGCTTATGGTGC 1918044 Score = 102 bits (112), Expect = 5e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| ||||||||||| ||| | Sbjct 1918713 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 1918772 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||| ||||||||||| ||||| || |||||||| || Sbjct 1918773 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 1918832 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 1918833 GCTGTGGATAA 1918843 >seq557 Length=3666638 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || |||||||| || || || ||||| ||| || | ||||| |||||| Sbjct 1175624 CCATCACGGCCAGCTCTACCAATCTCCTGGTAATATGATTCCATTTCCTTAGGAGCGCCA 1175565 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||| || ||| | ||||| | ||||||||| ||||||||||| || || || || Sbjct 1175564 TAATGAATGACTTTGCGAACATCAGCTTTATTAATGCCCATTCCAAAAGCTATGGTAGC 1175506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266781985985804