Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq170 387 2e-102 seq414 172 6e-38 seq371 107 2e-18 >seq170 Length=4243350 Score = 387 bits (428), Expect = 2e-102 Identities = 681/985 (69%), Gaps = 9/985 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| ||||||| ||| |||| ||| || | ||| | |||| ||| || ||| Sbjct 890929 TGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTGTGTCAAACTTA 890870 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || ||||| ||||| ||| | || ||||||| || ||| |||| ||||| || Sbjct 890869 TTGGCAAACAGGTGGTGCACGTGC---AGCATCCAGTTCAAGTCACCGGCTCCGAAAACA 890813 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | ||| | |||| |||| |||||||| | || || || | |||||| Sbjct 890812 CATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCA 890753 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| ||||||||||| || | |||||||| || ||||||| Sbjct 890752 CCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTGACATGTCGTAC 890693 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | || | | || || || | ||||| | ||| | |||||||| || Sbjct 890692 TTAGAACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATAGTGGCCCAGAGA 890633 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | ||||| |||||||| || || || | ||| ||||| |||| |||| | | Sbjct 890632 TACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCATTC 890573 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 || || | || || || | || ||||| || |||||||| || || | | Sbjct 890572 TCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTGCCTGAAAACAGC 890513 Query 160467 GGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 || | | ||| || ||| ||| ||| || |||| | || | ||| || || Sbjct 890512 GGCGTTTCAAGAGGAGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTAAC 890454 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 || | | |||| |||||||| | | || || | ||||| || || ||||| Sbjct 890453 CACTGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCATTTTCTCGGTTTCTAG 890394 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| | || | ||| || |||| | |||| || || ||||| || || | ||| Sbjct 890393 GTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATCGG 890334 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 ||| || ||||||| | || |||| ||||||||| | ||| |||| | || ||||| Sbjct 890333 AAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACTCATTTTGTAGAGGTC 890274 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | |||||| || || || ||||| || |||||||| || || ||||| || |||| || Sbjct 890273 CTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATACACCACACTCTCCAG 890214 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823 || ||||||||||| |||||| |||||| ||| | || || | ||| | ||| ||| Sbjct 890213 TTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAATCACTG-CAGCCAAAA 890155 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | || | || | ||| ||||||||| | ||| || | ||||||||| |||||| Sbjct 890154 AGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATG 890096 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| |||| ||| || || || ||||| | ||| ||||| || ||||| Sbjct 890095 GCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACTATAGAATATGCTATT 890036 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 |||||||| | ||| || ||| |||| | | ||| || ||| ||||||| ||| Sbjct 890035 GGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTGCGCTTCTTGATGAAA 889976 Query 161004 TAATCACAATCCCGCGTCATGTTGA 161028 | ||||||| | |||||||||| Sbjct 889975 GCAGCACAATCACTGGTCATGTTGA 889951 >seq414 Length=6018750 Score = 172 bits (190), Expect = 6e-38 Identities = 218/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || |||||||||||| || | || || || ||||| Sbjct 4933248 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCCTC 4933307 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| ||| |||| || || ||||| | Sbjct 4933308 CAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGTTGGGTGATGTTTAT 4933367 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 || ||||| | ||| || |||||||| || |||||||||||||||||| |||||| Sbjct 4933368 CTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGAAGGTGATCATGTT 4933427 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 |||||||| ||||| || || ||||| || || |||| || |||| | || Sbjct 4933428 TTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAGACTTCTTGGGGATTTTG 4933487 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 ||| || || || | || || || ||||||||| | |||| |||| || || || || Sbjct 4933488 CAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCTCTCTTACATCCTGGGTCACCAC 4933547 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATAT 167929 || ||| | | ||||| || ||| || || ||||| |||| | || |||| ||| || Sbjct 4930619 CCTTTGTTCACCGTTTCCCTGTA-GTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGAT 4930677 Query 167930 CACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACT 167989 |||||| || || || |||||||| || ||||| || || | ||||| || ||| Sbjct 4930678 CACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGA 4930734 Query 167990 TGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCAC 168049 ||| || |||||| | ||| | | | | || |||||||||||||| || || | || Sbjct 4930735 TGTTGTCCCATTGGGGTGTGAGAGAATCTCAGTACTGTTCTCAATCCCCGACCCAGAGAC 4930794 Query 168050 CTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||||| | || ||||| || || || || | |||||||| || ||||||| Sbjct 4930795 CTTCCAGGAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4930847 >seq371 Length=5870085 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| ||| Sbjct 2591321 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTTG 2591380 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 2591381 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 2591440 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | | Sbjct 2591441 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCGT 2591500 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 2591501 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 2591560 Query 176422 TACA 176425 | || Sbjct 2591561 TGCA 2591564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576984177987480