Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq170 387 2e-102
seq414 172 6e-38
seq371 107 2e-18
>seq170
Length=4243350
Score = 387 bits (428), Expect = 2e-102
Identities = 681/985 (69%), Gaps = 9/985 (1%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|| |||||||| ||||||| ||| |||| ||| || | ||| | |||| ||| || |||
Sbjct 890929 TGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTGTGTCAAACTTA 890870
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || ||||| ||||| ||| | || ||||||| || ||| |||| ||||| ||
Sbjct 890869 TTGGCAAACAGGTGGTGCACGTGC---AGCATCCAGTTCAAGTCACCGGCTCCGAAAACA 890813
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| || || || | ||| | |||| |||| |||||||| | || || || | ||||||
Sbjct 890812 CATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCA 890753
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
||||| ||||||||||||| ||||||||||| || | |||||||| || |||||||
Sbjct 890752 CCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTGACATGTCGTAC 890693
Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346
|| | | | || | | || || || | ||||| | ||| | |||||||| ||
Sbjct 890692 TTAGAACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATAGTGGCCCAGAGA 890633
Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406
| ||||| |||||||| || || || | ||| ||||| |||| |||| | |
Sbjct 890632 TACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCATTC 890573
Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466
|| || | || || || | || ||||| || |||||||| || || | |
Sbjct 890572 TCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTGCCTGAAAACAGC 890513
Query 160467 GGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525
|| | | ||| || ||| ||| ||| || |||| | || | ||| || ||
Sbjct 890512 GGCGTTTCAAGAGGAGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTAAC 890454
Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585
|| | | |||| |||||||| | | || || | ||||| || || |||||
Sbjct 890453 CACTGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCATTTTCTCGGTTTCTAG 890394
Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645
|||| | || | ||| || |||| | |||| || || ||||| || || | |||
Sbjct 890393 GTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATCGG 890334
Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705
||| || ||||||| | || |||| ||||||||| | ||| |||| | || |||||
Sbjct 890333 AAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACTCATTTTGTAGAGGTC 890274
Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765
| |||||| || || || ||||| || |||||||| || || ||||| || |||| ||
Sbjct 890273 CTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATACACCACACTCTCCAG 890214
Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823
|| ||||||||||| |||||| |||||| ||| | || || | ||| | ||| |||
Sbjct 890213 TTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAATCACTG-CAGCCAAAA 890155
Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883
| || | || | ||| ||||||||| | ||| || | ||||||||| ||||||
Sbjct 890154 AGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATG 890096
Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943
||||| || | ||| |||| ||| || || || ||||| | ||| ||||| || |||||
Sbjct 890095 GCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACTATAGAATATGCTATT 890036
Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003
|||||||| | ||| || ||| |||| | | ||| || ||| ||||||| |||
Sbjct 890035 GGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTGCGCTTCTTGATGAAA 889976
Query 161004 TAATCACAATCCCGCGTCATGTTGA 161028
| ||||||| | ||||||||||
Sbjct 889975 GCAGCACAATCACTGGTCATGTTGA 889951
>seq414
Length=6018750
Score = 172 bits (190), Expect = 6e-38
Identities = 218/300 (73%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229
||| || ||||| || || || || || |||||||||||| || | || || || |||||
Sbjct 4933248 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCCTC 4933307
Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289
|| |||||||||||| || || | |||||||| ||| |||| || || ||||| |
Sbjct 4933308 CAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGTTGGGTGATGTTTAT 4933367
Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349
|| ||||| | ||| || |||||||| || |||||||||||||||||| ||||||
Sbjct 4933368 CTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGAAGGTGATCATGTT 4933427
Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409
|||||||| ||||| || || ||||| || || |||| || |||| | ||
Sbjct 4933428 TTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAGACTTCTTGGGGATTTTG 4933487
Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469
||| || || || | || || || ||||||||| | |||| |||| || || || ||
Sbjct 4933488 CAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCTCTCTTACATCCTGGGTCACCAC 4933547
Score = 114 bits (126), Expect = 1e-20
Identities = 167/233 (72%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 167871 CCATTGCTAAGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATAT 167929
|| ||| | | ||||| || ||| || || ||||| |||| | || |||| ||| ||
Sbjct 4930619 CCTTTGTTCACCGTTTCCCTGTA-GTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGAT 4930677
Query 167930 CACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACT 167989
|||||| || || || |||||||| || ||||| || || | ||||| || |||
Sbjct 4930678 CACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGA 4930734
Query 167990 TGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCAC 168049
||| || |||||| | ||| | | | | || |||||||||||||| || || | ||
Sbjct 4930735 TGTTGTCCCATTGGGGTGTGAGAGAATCTCAGTACTGTTCTCAATCCCCGACCCAGAGAC 4930794
Query 168050 CTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
||||||| | || ||||| || || || || | |||||||| || |||||||
Sbjct 4930795 CTTCCAGGAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4930847
>seq371
Length=5870085
Score = 107 bits (118), Expect = 2e-18
Identities = 170/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| | |||| | | ||||| |||
Sbjct 2591321 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTTG 2591380
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| || |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 2591381 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 2591440
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| || || || || ||||| | || || | | || | || | |
Sbjct 2591441 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCGT 2591500
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || |
Sbjct 2591501 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 2591560
Query 176422 TACA 176425
| ||
Sbjct 2591561 TGCA 2591564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576984177987480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |