Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq158 205 7e-47 seq173 131 1e-24 seq780 104 2e-16 seq476 98.7 7e-15 seq557 96.9 3e-14 >seq158 Length=11426268 Score = 205 bits (226), Expect = 7e-47 Identities = 738/1146 (64%), Gaps = 35/1146 (3%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||| ||| || ||||||||||| | |||||| |||| |||||| Sbjct 5578481 TTATCCACAGCAGACACATCAAGGATTCCATTGGCATCAATATCAAAAGTGATTTCAATC 5578422 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 281534 ||||| || || | | ||||| || || ||| | || || || ||| | || | Sbjct 5578421 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 5578364 Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594 | ||||| || || | || ||||| || ||| || || || ||| || | Sbjct 5578363 TGTTATCCTTGGTCATGGCACGCTCACCATCATAAACCTGAATGAGCACACCAGGCTGGT 5578304 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 281654 | || || || || || || | | | ||| ||||| || || || | | | Sbjct 5578303 TGTCGGAGTAGGTAGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGCGCTTGA 5578244 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||||| | |||||||| |||| | | ||||||||||| | Sbjct 5578243 TGAGGATGGTCATGACTCCACCAGCAGTTTTGATTC-----------GGAGTGACATCCA 5578195 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 ||| | | | ||||| |||||| | | ||| | ||| ||||| || | || Sbjct 5578194 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 5578135 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| |||||||| |||||||| || | | | ||| |||| ||| ||||||| Sbjct 5578134 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCCCATTGA 5578075 Query 281835 AAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | ||||||| ||| | | | || ||||| | ||| ||||| || | ||| Sbjct 5578074 AGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGGTTGAGCCTCCCACCAGGACA 5578016 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | ||| || || || ||||||| |||| | |||| || || || || Sbjct 5578015 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 5577956 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | | |||| ||| | | | |||||| ||| || | |||| || | | Sbjct 5577955 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAATAGAGGTA 5577896 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | | || |||||||| | | ||||||| ||||| | || || ||||| Sbjct 5577895 TAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAGAG 5577836 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGA 282129 || | || |||||||| ||||| || || | || | || | || || | || Sbjct 5577835 AGAGTGCGCTTAGCACGCTCACAAGCAGTGCAGAGGCGACGGACAGCCCTCTTGTTCTCG 5577776 Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA-- 282187 |||| || | || | |||| |||||| ||| ||| | | ||| | | || Sbjct 5577775 CTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCTGCAATAAA--ATGGTTGACGATT 5577722 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| || || || || || | |||| ||| | |||| | | || | || Sbjct 5577721 CGGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTCCGGCAGTAGATTTGACATCAAAG 5577662 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTA---ACATCATGGGTTCCACCACCCATATCAAAA 282304 | |||||| |||| || ||| || |||||| || |||||||||| ||||| Sbjct 5577661 ATTCCATCCTCAATAGT---AAGGGTTGACACATCAAAAGTGCCACCACCCAAGTCAAAG 5577605 Query 282305 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || || ||||| |||| | |||| || | |||| |||| |||||||||| Sbjct 5577604 ATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTAAGCCATTAGCAATAGCAGCAGCA 5577545 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| |||||||| ||||| | || || ||||||||||| |||| |||||||| || Sbjct 5577544 GTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAGCAATAGTTCCAGCATCTTTGGTA 5577485 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 || || || || || || ||||| | || || || | | | |||| || || Sbjct 5577484 GCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTGTGACATCAGCATTGGTAACAGTC 5577425 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 || |||| || || ||| |||| | ||| || | |||| || ||||| | | Sbjct 5577424 TTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTGTCAAAACCACGGATGACACCTCC 5577365 Query 282545 TCTGGA 282550 |||||| Sbjct 5577364 TCTGGA 5577359 >seq173 Length=1059392 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 282332 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 164311 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 164252 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 164251 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 164194 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 164193 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 164134 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 | || || || || || |||| || || | || | | |||| || || | | Sbjct 164133 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 164074 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTT 282571 |||| ||| | | | ||| || || |||| || || | | | |||| | || | Sbjct 164073 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGG-GTAGAAAGCTTTTTTCTCCCCT 164015 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 | || || || | | || || || |||| || |||| ||| |||||| | Sbjct 164014 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 163955 Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 163954 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 163895 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || | ||| || |||||| | || | || | ||||| ||||| || || || | Sbjct 163894 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 163835 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || || || | ||||| || || ||||| || || || || || || || Sbjct 163834 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 163775 Query 282812 ATTTCAACTTTACC 282825 || || || || || Sbjct 163774 ATCTCCACCTTGCC 163761 >seq780 Length=1394479 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 248410 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 248469 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||||||||| | || || ||||| || |||||||||||| | | |||||| | Sbjct 248470 GTGGTTGGAAGAGACAAATACGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 248529 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 248530 GAAGCTTCTCATAAA 248544 >seq476 Length=2725381 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 1917407 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 1917348 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 1917347 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 1917288 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 1917287 GCGGGTACTGTGACCACAGCAT 1917266 >seq557 Length=3666638 Score = 96.9 bits (106), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 1175504 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1175563 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 1175564 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1175623 Query 131301 G 131301 | Sbjct 1175624 G 1175624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739031203353498