Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq158 205 7e-47
seq173 131 1e-24
seq780 104 2e-16
seq476 98.7 7e-15
seq557 96.9 3e-14
>seq158
Length=11426268
Score = 205 bits (226), Expect = 7e-47
Identities = 738/1146 (64%), Gaps = 35/1146 (3%)
Strand=Plus/Minus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
||||| | |||| ||||| ||| || ||||||||||| | |||||| |||| ||||||
Sbjct 5578481 TTATCCACAGCAGACACATCAAGGATTCCATTGGCATCAATATCAAAAGTGATTTCAATC 5578422
Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 281534
||||| || || | | ||||| || || ||| | || || || ||| | || |
Sbjct 5578421 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 5578364
Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594
| ||||| || || | || ||||| || ||| || || || ||| || |
Sbjct 5578363 TGTTATCCTTGGTCATGGCACGCTCACCATCATAAACCTGAATGAGCACACCAGGCTGGT 5578304
Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 281654
| || || || || || || | | | ||| ||||| || || || | | |
Sbjct 5578303 TGTCGGAGTAGGTAGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGCGCTTGA 5578244
Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714
| | ||||||| | |||||||| |||| | | ||||||||||| |
Sbjct 5578243 TGAGGATGGTCATGACTCCACCAGCAGTTTTGATTC-----------GGAGTGACATCCA 5578195
Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774
||| | | | ||||| |||||| | | ||| | ||| ||||| || | ||
Sbjct 5578194 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 5578135
Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834
| |||||||| |||||||| |||||||| || | | | ||| |||| ||| |||||||
Sbjct 5578134 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCCCATTGA 5578075
Query 281835 AAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACA 281893
| || | ||||||| ||| | | | || ||||| | ||| ||||| || | |||
Sbjct 5578074 AGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGGTTGAGCCTCCCACCAGGACA 5578016
Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953
|| ||||| | ||| || || || ||||||| |||| | |||| || || || ||
Sbjct 5578015 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 5577956
Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013
|| | | |||| ||| | | | |||||| ||| || | |||| || | |
Sbjct 5577955 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAATAGAGGTA 5577896
Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073
| | || |||||||| | | ||||||| ||||| | || || |||||
Sbjct 5577895 TAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAGAG 5577836
Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGA 282129
|| | || |||||||| ||||| || || | || | || | || || | ||
Sbjct 5577835 AGAGTGCGCTTAGCACGCTCACAAGCAGTGCAGAGGCGACGGACAGCCCTCTTGTTCTCG 5577776
Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA-- 282187
|||| || | || | |||| |||||| ||| ||| | | ||| | | ||
Sbjct 5577775 CTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCTGCAATAAA--ATGGTTGACGATT 5577722
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
|| || ||||| || || || || || | |||| ||| | |||| | | || | ||
Sbjct 5577721 CGGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTCCGGCAGTAGATTTGACATCAAAG 5577662
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTA---ACATCATGGGTTCCACCACCCATATCAAAA 282304
| |||||| |||| || ||| || |||||| || |||||||||| |||||
Sbjct 5577661 ATTCCATCCTCAATAGT---AAGGGTTGACACATCAAAAGTGCCACCACCCAAGTCAAAG 5577605
Query 282305 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364
|| || ||||| |||| | |||| || | |||| |||| ||||||||||
Sbjct 5577604 ATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTAAGCCATTAGCAATAGCAGCAGCA 5577545
Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424
||||| |||||||| ||||| | || || ||||||||||| |||| |||||||| ||
Sbjct 5577544 GTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAGCAATAGTTCCAGCATCTTTGGTA 5577485
Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484
|| || || || || || ||||| | || || || | | | |||| || ||
Sbjct 5577484 GCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTGTGACATCAGCATTGGTAACAGTC 5577425
Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544
|| |||| || || ||| |||| | ||| || | |||| || ||||| | |
Sbjct 5577424 TTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTGTCAAAACCACGGATGACACCTCC 5577365
Query 282545 TCTGGA 282550
||||||
Sbjct 5577364 TCTGGA 5577359
>seq173
Length=1059392
Score = 131 bits (144), Expect = 1e-24
Identities = 366/554 (66%), Gaps = 6/554 (1%)
Strand=Plus/Minus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 282332
|||||| || || ||||||| |||||| || || || | || | || || | || |
Sbjct 164311 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 164252
Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392
|| | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || |
Sbjct 164251 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 164194
Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452
| ||||| ||||| |||||||| || ||||| || | || || || || ||||| |
Sbjct 164193 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 164134
Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512
| || || || || || |||| || || | || | | |||| || || | |
Sbjct 164133 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 164074
Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTT 282571
|||| ||| | | | ||| || || |||| || || | | | |||| | || |
Sbjct 164073 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGG-GTAGAAAGCTTTTTTCTCCCCT 164015
Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631
| || || || | | || || || |||| || |||| ||| |||||| |
Sbjct 164014 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 163955
Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691
|||||||||||||| || | |||||||| | || ||||| | ||||| ||||||
Sbjct 163954 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 163895
Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751
|| | ||| || |||||| | || | || | ||||| ||||| || || || |
Sbjct 163894 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 163835
Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811
|| || || || || | ||||| || || ||||| || || || || || || ||
Sbjct 163834 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 163775
Query 282812 ATTTCAACTTTACC 282825
|| || || || ||
Sbjct 163774 ATCTCCACCTTGCC 163761
>seq780
Length=1394479
Score = 104 bits (114), Expect = 2e-16
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| |
Sbjct 248410 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 248469
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||||||||| | || || ||||| || |||||||||||| | | |||||| |
Sbjct 248470 GTGGTTGGAAGAGACAAATACGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 248529
Query 400417 GATGCTAGTCCTAAA 400431
|| ||| || ||||
Sbjct 248530 GAAGCTTCTCATAAA 248544
>seq476
Length=2725381
Score = 98.7 bits (108), Expect = 7e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 1917407 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 1917348
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 1917347 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 1917288
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
|| || || || | || ||||
Sbjct 1917287 GCGGGTACTGTGACCACAGCAT 1917266
>seq557
Length=3666638
Score = 96.9 bits (106), Expect = 3e-14
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240
|||| || ||||| ||||| ||||| ||||||||| | |||||| | || |||||||
Sbjct 1175504 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1175563
Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300
| || ||||| ||| | || ||| ||||| || || ||||||||||| || |||||||
Sbjct 1175564 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1175623
Query 131301 G 131301
|
Sbjct 1175624 G 1175624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739031203353498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |