Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq1216 199 3e-46
>seq1216
Length=3486040
Score = 199 bits (220), Expect = 3e-46
Identities = 484/723 (67%), Gaps = 79/723 (11%)
Strand=Plus/Plus
Query 1070 CCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGC 1129
|||||||| || |||||||||||||||| ||||||| ||| || | | | |||||||
Sbjct 2634434 CCCACAGCCCTGGCTTCTGGTCTGAAAA-GAGTAGGCATCTTCTGGGTGCCATGGAAGGC 2634492
Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189
|||||||||||| ||||| || |||||||| | || |||||||||| | |||| |||
Sbjct 2634493 ATTTTAAAGAAATGGCTTGAAAGAAAAATCTCGAGGTCACTTACATAGTTATCCAAAAGC 2634552
Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTG----TAT-GTCCCGTGGTA 1244
| |||||||| || || || ||||| || ||| ||| || ||| ||
Sbjct 2634553 TCCTTAAATGAGATCTTTAACTCCTCGATTATGCCTCGTTGGTCATATGGTTCCGGCGT- 2634611
Query 1245 GTGGATGG---CCGT--GGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGC 1299
|| | ||| |||| || |||| || |||| ||| ||||||||| ||||||||||||
Sbjct 2634612 GTAGGTGGGCACCGTGCGGCAGGACAGGAAGGGTCCCAAACAGCAGAACAGGAACAGGGC 2634671
Query 1300 AAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC-------CCACACACCCCCACCTGCC 1352
||| | | |||| || | | | ||| | |||| ||| |||||||| ||||||
Sbjct 2634672 AAGTCTGGCAGATCCTGGAGAGAGAGAATGATGCTATGAAGCCAGACACCCCCGCCTGCC 2634731
Query 1353 CCA-------TACCTTAACCTGCCCAAGCTTTCA-CCACCGAAGCTGTGCCGGACTGAGC 1404
||| | ||||| | || | || | ||||| | || |||| |
Sbjct 2634732 CCAGCTTGCGTCACTTAAGCCGCTGTTGGGTTGAGCCACC--------TCTGGGCTGA-C 2634782
Query 1405 CCCATCCA--GTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGG 1462
||| | || ||||| |||| ||| | || || || | | ||| ||| | || ||
Sbjct 2634783 CCCCTGCATGGTCTTCCTCTCCATCTGGAGACACCAGA-CTCTCCCCCCA-AACCAGCGG 2634840
Query 1463 CTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCT 1522
| | ||| | | || |||||| | |||| || || || |||||||| ||| || |||
Sbjct 2634841 CAGCAGGCCGCAGCGGTACCTGTGTGGGAGACCATGGCGGGAGAGAGAGAG---GCTGCT 2634897
Query 1523 TTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAG 1582
| ||| |||||| || ||| |||||||| || || | | |||| ||||||||||
Sbjct 2634898 TCGGCGACAGCTTCTGGAGCCCGATGTGCTGGCCATGGTCCTCGGGA--GGTATATAAAG 2634955
Query 1583 GGCTAGTTGTAAGG-AGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACT---- 1635
||| ||| | |||| || || || | || || ||||||| | | | ||||||||
Sbjct 2634956 GGCCAGTCGCAAGGAAGAAGGACCATCAATGTCCCGCCCATAGCAGAATCATTACTCAGC 2635015
Query 1636 -------CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCG 1687
||||||||| ||||||| || ||||| | |||||||
Sbjct 2635016 TTTTCTCCAGAAAACACTTTCAAAATTCTGCCACC----------------CAAGGCTGA 2635059
Query 1688 AAGGAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744
||||||| ||| |||||||| ||| ||||| || |||| || | || | |||||
Sbjct 2635060 AAGGAAACGCTGAGGTTACCCTGAAGGTGGGCCACCGCCTGACTCAGTCCAGACGCACAC 2635119
Query 1745 CGG 1747
||
Sbjct 2635120 AGG 2635122
Score = 147 bits (162), Expect = 2e-30
Identities = 245/347 (71%), Gaps = 19/347 (5%)
Strand=Plus/Plus
Query 417 TTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTG 476
|||||||| ||||||||| | ||||| | | ||||| ||| |||| | |
Sbjct 2632955 TTCAGGCAGTTTGAAAACTGATTTAAAATAGTCAAGATGAATCTTTTCTTTTCAAATTGA 2633014
Query 477 TCTGTAGGCATAGAAATGTCTG------GTGCGCGTTGCAATTCAAGTTTTTTGAGATGG 530
|||||||||| |||||||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 2633015 TCTGTAGGCACAGAAATGTTTGTTTTTGGTGCACGTTGAAATTCGAGTTTGTCGAGATGT 2633074
Query 531 TCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAA 590
|| ||||| || || | | ||| || ||| | | || || ||| ||||| ||||||
Sbjct 2633075 TCTATGACCACATCAAGAGT--TTG-GTTATTGAGTATTGGTTGGATCGCTCTGAAATAA 2633131
Query 591 GGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG-CTGGGGGCTCA-CAGAAAAGCACT 648
|||||||||||||| |||| || || |||||| || |||||| ||| ||| || |||
Sbjct 2633132 GGCAGGATGGCTGAGCTGTCGAGGTAGTGTGGGGGTCTGGGG--TCAGCAGTGAAACACG 2633189
Query 649 GCATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG---AA 705
|||| | || || ||| || | ||| ||||| | |||| ||| || ||
Sbjct 2633190 GCATCTCGTACTGGCTGGATATTGGCACTCC---TTTCTCGTCCTGCAGCTGGGGAACAA 2633246
Query 706 GGAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCC 752
|||| ||||||||||||| | ||| ||| || ||| |||||| ||
Sbjct 2633247 GGAGTCGAAATGGGTGAGCGTCAGTTTTGCGAAACAGCCAGAAATCC 2633293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438381434814000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |