Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq1216 199 3e-46 >seq1216 Length=3486040 Score = 199 bits (220), Expect = 3e-46 Identities = 484/723 (67%), Gaps = 79/723 (11%) Strand=Plus/Plus Query 1070 CCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGC 1129 |||||||| || |||||||||||||||| ||||||| ||| || | | | ||||||| Sbjct 2634434 CCCACAGCCCTGGCTTCTGGTCTGAAAA-GAGTAGGCATCTTCTGGGTGCCATGGAAGGC 2634492 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 |||||||||||| ||||| || |||||||| | || |||||||||| | |||| ||| Sbjct 2634493 ATTTTAAAGAAATGGCTTGAAAGAAAAATCTCGAGGTCACTTACATAGTTATCCAAAAGC 2634552 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTG----TAT-GTCCCGTGGTA 1244 | |||||||| || || || ||||| || ||| ||| || ||| || Sbjct 2634553 TCCTTAAATGAGATCTTTAACTCCTCGATTATGCCTCGTTGGTCATATGGTTCCGGCGT- 2634611 Query 1245 GTGGATGG---CCGT--GGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGC 1299 || | ||| |||| || |||| || |||| ||| ||||||||| |||||||||||| Sbjct 2634612 GTAGGTGGGCACCGTGCGGCAGGACAGGAAGGGTCCCAAACAGCAGAACAGGAACAGGGC 2634671 Query 1300 AAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC-------CCACACACCCCCACCTGCC 1352 ||| | | |||| || | | | ||| | |||| ||| |||||||| |||||| Sbjct 2634672 AAGTCTGGCAGATCCTGGAGAGAGAGAATGATGCTATGAAGCCAGACACCCCCGCCTGCC 2634731 Query 1353 CCA-------TACCTTAACCTGCCCAAGCTTTCA-CCACCGAAGCTGTGCCGGACTGAGC 1404 ||| | ||||| | || | || | ||||| | || |||| | Sbjct 2634732 CCAGCTTGCGTCACTTAAGCCGCTGTTGGGTTGAGCCACC--------TCTGGGCTGA-C 2634782 Query 1405 CCCATCCA--GTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGG 1462 ||| | || ||||| |||| ||| | || || || | | ||| ||| | || || Sbjct 2634783 CCCCTGCATGGTCTTCCTCTCCATCTGGAGACACCAGA-CTCTCCCCCCA-AACCAGCGG 2634840 Query 1463 CTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCT 1522 | | ||| | | || |||||| | |||| || || || |||||||| ||| || ||| Sbjct 2634841 CAGCAGGCCGCAGCGGTACCTGTGTGGGAGACCATGGCGGGAGAGAGAGAG---GCTGCT 2634897 Query 1523 TTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAG 1582 | ||| |||||| || ||| |||||||| || || | | |||| |||||||||| Sbjct 2634898 TCGGCGACAGCTTCTGGAGCCCGATGTGCTGGCCATGGTCCTCGGGA--GGTATATAAAG 2634955 Query 1583 GGCTAGTTGTAAGG-AGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACT---- 1635 ||| ||| | |||| || || || | || || ||||||| | | | |||||||| Sbjct 2634956 GGCCAGTCGCAAGGAAGAAGGACCATCAATGTCCCGCCCATAGCAGAATCATTACTCAGC 2635015 Query 1636 -------CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCG 1687 ||||||||| ||||||| || ||||| | ||||||| Sbjct 2635016 TTTTCTCCAGAAAACACTTTCAAAATTCTGCCACC----------------CAAGGCTGA 2635059 Query 1688 AAGGAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744 ||||||| ||| |||||||| ||| ||||| || |||| || | || | ||||| Sbjct 2635060 AAGGAAACGCTGAGGTTACCCTGAAGGTGGGCCACCGCCTGACTCAGTCCAGACGCACAC 2635119 Query 1745 CGG 1747 || Sbjct 2635120 AGG 2635122 Score = 147 bits (162), Expect = 2e-30 Identities = 245/347 (71%), Gaps = 19/347 (5%) Strand=Plus/Plus Query 417 TTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTG 476 |||||||| ||||||||| | ||||| | | ||||| ||| |||| | | Sbjct 2632955 TTCAGGCAGTTTGAAAACTGATTTAAAATAGTCAAGATGAATCTTTTCTTTTCAAATTGA 2633014 Query 477 TCTGTAGGCATAGAAATGTCTG------GTGCGCGTTGCAATTCAAGTTTTTTGAGATGG 530 |||||||||| |||||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 2633015 TCTGTAGGCACAGAAATGTTTGTTTTTGGTGCACGTTGAAATTCGAGTTTGTCGAGATGT 2633074 Query 531 TCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAA 590 || ||||| || || | | ||| || ||| | | || || ||| ||||| |||||| Sbjct 2633075 TCTATGACCACATCAAGAGT--TTG-GTTATTGAGTATTGGTTGGATCGCTCTGAAATAA 2633131 Query 591 GGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG-CTGGGGGCTCA-CAGAAAAGCACT 648 |||||||||||||| |||| || || |||||| || |||||| ||| ||| || ||| Sbjct 2633132 GGCAGGATGGCTGAGCTGTCGAGGTAGTGTGGGGGTCTGGGG--TCAGCAGTGAAACACG 2633189 Query 649 GCATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG---AA 705 |||| | || || ||| || | ||| ||||| | |||| ||| || || Sbjct 2633190 GCATCTCGTACTGGCTGGATATTGGCACTCC---TTTCTCGTCCTGCAGCTGGGGAACAA 2633246 Query 706 GGAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCC 752 |||| ||||||||||||| | ||| ||| || ||| |||||| || Sbjct 2633247 GGAGTCGAAATGGGTGAGCGTCAGTTTTGCGAAACAGCCAGAAATCC 2633293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438381434814000