Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq469 159 7e-34
seq99 154 3e-32
seq615 125 1e-23
seq164 98.7 2e-15
seq17 98.7 2e-15
seq500 86.0 1e-11
>seq469
Length=2995260
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| || |||||||| || ||||||||||| ||||| ||||| || || || |||||
Sbjct 1051329 ACCTCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 1051388
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || ||||| || |||||||| | || || || ||||| ||
Sbjct 1051389 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1051448
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || ||||| ||||| ||||| || || || || || || || ||| | || || ||
Sbjct 1051449 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 1051508
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || ||||| || ||||| ||||| || || ||||||||
Sbjct 1051509 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556
>seq99
Length=2554289
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| |||||| || | |||||| || || || ||||| || || |||||||
Sbjct 1822262 TACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 1822321
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || ||||| || || || || || ||||| || | || || || ||||
Sbjct 1822322 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAG 1822381
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||||||||| || ||||| || || || || || || || || |||| || |
Sbjct 1822382 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCA 1822441
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| |||| || || |||||||| ||||| ||||| || || |||||||||
Sbjct 1822442 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATT 1822491
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| |||||| || | |||||| || || || ||||| || || |||||||
Sbjct 1822034 TACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 1822093
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || ||||| || || || || || ||||| || | || || || ||||
Sbjct 1822094 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAG 1822153
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||||||||| || ||||| || || || || || || || || |||| || |
Sbjct 1822154 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCA 1822213
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || |||||||| |||| ||||| || || ||||||||
Sbjct 1822214 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262
>seq615
Length=2269971
Score = 125 bits (138), Expect = 1e-23
Identities = 166/230 (72%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCT---GTATATTATAATCA 82640
|| |||| || ||| | ||||||||||| || || || |||| | ||||| || ||
Sbjct 1647557 CCACCTCACAGACGACGCACTAAGTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCT 1647498
Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700
|| ||| | | || || ||||| ||||| || |||| || || | || ||||| ||
Sbjct 1647497 GACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCAGGT 1647438
Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760
|| || || ||||| || || || || ||||| ||||| ||| | || ||| | || ||
Sbjct 1647437 GGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCA 1647378
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | || || |||||||| |||| ||||| ||||| ||||||||
Sbjct 1647377 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1647328
>seq164
Length=6526486
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| |||||| || ||| | |||| || || |||||||| | || ||||| ||
Sbjct 3962273 CCGCCTCCCAAACGAAGCACTGAATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGAC 3962332
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || || || || ||||| || | || || || || || || || ||
Sbjct 3962333 AGAGTACGGCCATCCTCCAGCTGTTTCCCCGTGAAAATGAGATGCTGCTGGTCAGGTGGG 3962392
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| |||| || | ||||| ||||| | | | || ||| | | || ||
Sbjct 3962393 ATGCCCTCCTTGTCTTAGATTGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACC 3962452
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||||||||||| ||||| ||||| ||||| ||
Sbjct 3962453 TCGAGGGTGATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGTAT 3962499
>seq17
Length=4188677
Score = 98.7 bits (108), Expect = 2e-15
Identities = 98/127 (77%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368
|||||||||||||||| ||| |||||||||| |||||||| ||||||||| | || ||||
Sbjct 340257 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATG 340316
Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428
| || | || | ||| || | || | |||||| | |||||||| || || || || |
Sbjct 340317 GGTTGACTGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCA 340376
Query 60429 TAATGCA 60435
| ||||
Sbjct 340377 TGTTGCA 340383
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| |||||||| || || || || || || || ||||||||||| || |||
Sbjct 339068 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 339127
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || ||| | |||||||||||||| | ||| |||||||| ||
Sbjct 339128 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 339187
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
| ||| | || ||||| ||| | || || || ||
Sbjct 339188 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 339222
>seq500
Length=3735249
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/133 (75%), Gaps = 4/133 (3%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || || ||||| | ||| ||||||| ||||
Sbjct 3516225 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAGT-ACGTCT---GTCTTCTGGTTGC 3516170
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| | ||||||||| ||||||| |||| ||| | ||||||||||||||||| || ||
Sbjct 3516169 TTCCTAGCAAAGATAGGTCTTTGCTGATTGGGAAGAATTCCTTCCTTATCTTGGATGTTG 3516110
Query 82728 GCTTTTACATTTT 82740
|| ||| ||||||
Sbjct 3516109 GCCTTTGCATTTT 3516097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981417442702247
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |