Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq3709 107 3e-18
seq1280 107 3e-18
seq684 105 9e-18
seq469 105 9e-18
seq10222 104 3e-17
seq2167 84.2 3e-11
>seq3709
Length=210978
Score = 107 bits (118), Expect = 3e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 91250 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 91309
Query 8716 TCCCCGACGAGGAG 8729
||||||||| ||||
Sbjct 91310 TCCCCGACGGGGAG 91323
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 135054 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 134995
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 134994 CCCCGACGGGGAG 134982
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 135053 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 134994
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 134993 CCCGACGGGGAGG 134981
Score = 100 bits (110), Expect = 4e-16
Identities = 68/75 (91%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 91249 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 91308
Query 11786 TTCCCCGACGAGGAG 11800
|||||||||| ||||
Sbjct 91309 TTCCCCGACGGGGAG 91323
Score = 96.9 bits (106), Expect = 5e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 139348 CACAAC-TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAA 139406
|||||| ||| ||||||||| |||||||||||||||||| | |||| |||||||| | |
Sbjct 134976 CACAACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 135035
Query 139407 CCACTATACTAACGAGGA 139424
||||||||||||||||||
Sbjct 135036 CCACTATACTAACGAGGA 135053
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 91323 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 91264
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 91263 TACTAACGAGGA 91252
>seq1280
Length=1139451
Score = 107 bits (118), Expect = 3e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 109845 CTCATTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 109904
Query 8713 GATTCCCCGACGAGGAG 8729
|||||||||||| ||||
Sbjct 109905 GATTCCCCGACGGGGAG 109921
Score = 102 bits (112), Expect = 1e-16
Identities = 70/78 (90%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||
Sbjct 109847 CATTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 109906
Query 11786 TTCCCCGACGAGGAGGGA 11803
|||||||||| |||| ||
Sbjct 109907 TTCCCCGACGGGGAGAGA 109924
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 109921 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 109862
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 109861 TACTAACGAGGA 109850
>seq684
Length=8613401
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2188045 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2188104
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 2188105 CCCCGACGGGGAG 2188117
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 4043006 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 4043065
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 4043066 CCCGACGGGGAG 4043077
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2188046 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2188105
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 2188106 CCCGACGGGGAG 2188117
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2188117 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2188058
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2188057 TACTAACGAGGA 2188046
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 4043006 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 4043065
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 4043066 CCCGACGGGGAG 4043077
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 4043077 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4043018
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4043017 TACTAACGAGGA 4043006
>seq469
Length=2995260
Score = 105 bits (116), Expect = 9e-18
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 1063174 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 1063115
Query 11787 TCCCCGACGAGGAGG 11801
||||||||| |||||
Sbjct 1063114 TCCCCGACGGGGAGG 1063100
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 1063175 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 1063116
Query 8715 TTCCCCGACGAGGAG 8729
|||||||||| ||||
Sbjct 1063115 TTCCCCGACGGGGAG 1063101
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 1070043 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1069984
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 1069983 CCCCGACGGGGAGG 1069970
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 1070042 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1069983
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 1069982 CCCGACGGGGAG 1069971
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1063101 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1063160
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 1063161 TACTAACGAGGA 1063172
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1069971 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1070030
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 1070031 TACTAACGAGGA 1070042
>seq10222
Length=1112
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 448 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 507
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 508 CCCCGACGGGGAGG 521
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 449 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 508
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 509 CCCGACGGGGAG 520
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 461
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 460 TACTAACGAGGA 449
>seq2167
Length=69529
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 8659 CCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 8718
|||||||||||||||||| ||||| | | ||||| | ||||||||||||||||||||||
Sbjct 53563 CCTCGTTAGTATAGTGGTAAGTATCTCTGCCTGTCACGCGGGAGACCGGGGTTCGATTCC 53504
Query 8719 CCGACGAGGAG 8729
| ||| ||||
Sbjct 53503 GCCACGGGGAG 53493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652578986079120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |