Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq99 149 6e-31
seq119 118 1e-21
seq164 116 4e-21
seq89 93.3 4e-14
>seq99
Length=2554289
Score = 149 bits (164), Expect = 6e-31
Identities = 154/199 (77%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1822065 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1822123
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 1822124 CTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1822183
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | |||||| | |||||||| || | ||||| ||| ||||||||||| |
Sbjct 1822184 TCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 1822243
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 1822244 TCTTCACGAAGATCTGCAT 1822262
Score = 140 bits (154), Expect = 3e-28
Identities = 152/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1822293 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1822351
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 1822352 CTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1822411
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | |||||| | |||||||| || | ||||| ||| ||||| |||| |
Sbjct 1822412 TCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGG 1822471
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 1822472 TCTTCACGAAGATCTGCAT 1822490
Score = 131 bits (144), Expect = 2e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1816900 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1816958
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||||| ||||||||| ||||||||||| ||||| || |||||| ||
Sbjct 1816959 CTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCT 1817018
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| |
Sbjct 1817019 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGG 1817078
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 1817079 TCTTCACGAAGATCTGCAT 1817097
>seq119
Length=227305
Score = 118 bits (130), Expect = 1e-21
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||||||||| |||||||| || ||| ||| | ||||| ||
Sbjct 86654 AAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCA-TCCTCCAG 86712
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| |||| ||| |||| || |||||||||| || |||||||| |||||||| |||
Sbjct 86713 CTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT 86772
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | |||| ||||| ||||||| || || | ||||| ||| ||||
Sbjct 86773 -TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 86831
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| |||| || || || || | ||||||
Sbjct 86832 CCATCAGGGTCTTCACAAAGACCTGCAT 86859
>seq164
Length=6526486
Score = 116 bits (128), Expect = 4e-21
Identities = 153/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 133456 AATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGC 133514
|||| | ||||||||||||||| | || |||||| || || | | | ||||| |||
Sbjct 3962295 AATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCA-TCCTCCAGC 3962353
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| || |||| | ||||||| |||||||||| || |||||||| |||||||| |||
Sbjct 3962354 TGTTTCCCCGTGAAAATGAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGAT- 3962412
Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
| | || |||| | || | ||||| |||| ||| || |||| ||||| || |||||
Sbjct 3962413 TGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCC 3962472
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || || || ||||| ||
Sbjct 3962473 TGTCAGGGTCTTCACAAAGATCTGTAT 3962499
>seq89
Length=3644534
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||| | ||||||| || | || ||||||||||| || |||||||| ||||||
Sbjct 1710779 TCATCCAGCTGTTCGCCCGCGAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 1710720
Query 133566 TCGGTGATCTTTTGCT-TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| |||| ||| ||| ||| | |||| ||||| |||||| || |||| |||||
Sbjct 1710719 TCTTTGAT-TTTAGCTCTGACATTCTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAG 1710661
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657
||| ||||| |||| | || || || | |||
Sbjct 1710660 GGTCTTGCCCATCAGGCTCTTCACAAAGACCTG 1710628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483223969178520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |