Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq99 149 6e-31 seq119 118 1e-21 seq164 116 4e-21 seq89 93.3 4e-14 >seq99 Length=2554289 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1822065 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1822123 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||||||||||||| ||||||||||||||||| || |||||| || Sbjct 1822124 CTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1822183 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| | |||||||| || | ||||| ||| ||||||||||| | Sbjct 1822184 TCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 1822243 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1822244 TCTTCACGAAGATCTGCAT 1822262 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1822293 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1822351 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||||||||||||| ||||||||||||||||| || |||||| || Sbjct 1822352 CTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1822411 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| | |||||||| || | ||||| ||| ||||| |||| | Sbjct 1822412 TCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGG 1822471 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1822472 TCTTCACGAAGATCTGCAT 1822490 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1816900 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1816958 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| ||||||||| ||||||||||| ||||| || |||||| || Sbjct 1816959 CTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCT 1817018 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| | Sbjct 1817019 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGG 1817078 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1817079 TCTTCACGAAGATCTGCAT 1817097 >seq119 Length=227305 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| |||||||| || ||| ||| | ||||| || Sbjct 86654 AAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCA-TCCTCCAG 86712 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||| ||| |||| || |||||||||| || |||||||| |||||||| ||| Sbjct 86713 CTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT 86772 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | |||| ||||| ||||||| || || | ||||| ||| |||| Sbjct 86773 -TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 86831 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || | |||||| Sbjct 86832 CCATCAGGGTCTTCACAAAGACCTGCAT 86859 >seq164 Length=6526486 Score = 116 bits (128), Expect = 4e-21 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 133456 AATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGC 133514 |||| | ||||||||||||||| | || |||||| || || | | | ||||| ||| Sbjct 3962295 AATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCA-TCCTCCAGC 3962353 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || |||| | ||||||| |||||||||| || |||||||| |||||||| ||| Sbjct 3962354 TGTTTCCCCGTGAAAATGAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGAT- 3962412 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | | || |||| | || | ||||| |||| ||| || |||| ||||| || ||||| Sbjct 3962413 TGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCC 3962472 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || ||||| || Sbjct 3962473 TGTCAGGGTCTTCACAAAGATCTGTAT 3962499 >seq89 Length=3644534 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| | ||||||| || | || ||||||||||| || |||||||| |||||| Sbjct 1710779 TCATCCAGCTGTTCGCCCGCGAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 1710720 Query 133566 TCGGTGATCTTTTGCT-TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||| ||| ||| ||| | |||| ||||| |||||| || |||| ||||| Sbjct 1710719 TCTTTGAT-TTTAGCTCTGACATTCTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAG 1710661 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 ||| ||||| |||| | || || || | ||| Sbjct 1710660 GGTCTTGCCCATCAGGCTCTTCACAAAGACCTG 1710628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483223969178520