Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq170 295 8e-75 seq414 197 2e-45 >seq170 Length=4243350 Score = 295 bits (326), Expect = 8e-75 Identities = 675/1005 (67%), Gaps = 17/1005 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| |||||| | |||||||| || || | |||| || Sbjct 890940 CCAGGGCTTTATGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTG 890881 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||||||| ||| || | || |||| || | || || | Sbjct 890880 TGTCAAACTTATTGGCAAACAGGTGGTGCACGTGCAGCA---TCCAGTTCAAGTCACCGG 890824 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || || || || |||||||| | ||||||||||||||| || |||| || | Sbjct 890823 CTCCGAAAACACATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 890764 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||||||||| ||||| | |||| |||||||| | Sbjct 890763 TGGAAACGTCACCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTG 890704 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||||||||| | ||| | || || | || || || | |||| ||||| | | Sbjct 890703 ACATGTCGTACTTAGA-ACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATA 890645 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | |||||||| || || || || || | ||||||||| |||| | | Sbjct 890644 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGG 890585 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | || | || || || ||| | || | ||| || ||||| Sbjct 890584 ATTTTTTCATTCTCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTG 890525 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| || | | |||||| | |||||| ||| |||| | | Sbjct 890524 CCTGAAAACAGCGGCGTTTCAAGAGGAGGATGTATTTTGTCAGTCCCCATGTTTGTCAGC 890465 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || ||||| ||| | ||| ||||||| | | ||| || | | Sbjct 890464 TTTCCAT-TA--ACCAC-TGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCAT 890409 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | ||||| ||||| |||| ||| || | ||| |||| | || || || || Sbjct 890408 TTTCTCGGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAG 890349 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | || Sbjct 890348 GTTGGTTTTAATCGGAAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACT 890289 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || ||||| | ||||| | || ||||| || || |||||||| || || Sbjct 890288 CATTTTGTAGAGGTCCTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATA 890229 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| || ||||||| |||| ||||| || || |||||| || | || || || Sbjct 890228 CACCACACTCTCCAGTTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAAT 890169 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| | ||| | || || || | ||| | || ||||| | |||||| | |||| Sbjct 890168 CACTG-CAGCCAAAAAGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTC 890111 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || |||| ||| || || || || || ||||| Sbjct 890110 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACT 890051 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 |||||||| ||||| || ||||| ||||| || ||| || | || || ||| ||| Sbjct 890050 ATAGAATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTG 889991 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || || ||||| || |||||||| |||||| Sbjct 889990 CGCTTCTTGATGAAAGCAGCACAATCACTGGTCATGTTGACGTAG 889946 >seq414 Length=6018750 Score = 197 bits (218), Expect = 2e-45 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || || ||||| ||||| || | | Sbjct 4933226 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 4933285 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 4933286 ACTTGTAACACCCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 4933345 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| ||||| || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 4933346 GTCCCAGTTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 4933405 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 4933406 TCTCGCTGAAGGTGATCATGTTTTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 4933465 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||||| | |||| |||||||| |||||||| ||||||||||||| | Sbjct 4933466 TCAAGACTTCTTGGGGATTTTGCAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCT 4933525 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 4933526 CTCTTACATCCTGGGTCACCAC 4933547 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || |||| ||| || || |||||||||| || | || | ||| |||||||||| Sbjct 4930628 ACCGTTTCCCTGTAGTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGATCACCTCCT-- 4930685 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || || || ||||| || |||||||| ||||| Sbjct 4930686 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGATGTTGTCCCA 4930744 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || || || || | || ||||| Sbjct 4930745 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCCCCGACCCAGAGACCTTCCAG 4930801 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| ||||| | |||| | ||||||||||| || |||| Sbjct 4930802 GAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4930847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578196484180800