Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq170 295 8e-75
seq414 197 2e-45
>seq170
Length=4243350
Score = 295 bits (326), Expect = 8e-75
Identities = 675/1005 (67%), Gaps = 17/1005 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| || |||| |||||| | |||||||| || || | |||| ||
Sbjct 890940 CCAGGGCTTTATGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTG 890881
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || |||||||| ||| || | || |||| || | || || |
Sbjct 890880 TGTCAAACTTATTGGCAAACAGGTGGTGCACGTGCAGCA---TCCAGTTCAAGTCACCGG 890824
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| || || || || |||||||| | ||||||||||||||| || |||| || |
Sbjct 890823 CTCCGAAAACACATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 890764
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| ||||||||||| ||||| | |||| |||||||| |
Sbjct 890763 TGGAAACGTCACCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTG 890704
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| |||||||||| | ||| | || || | || || || | |||| ||||| | |
Sbjct 890703 ACATGTCGTACTTAGA-ACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATA 890645
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | |||||||| || || || || || | ||||||||| |||| | |
Sbjct 890644 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGG 890585
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| || | || | || || || ||| | || | ||| || |||||
Sbjct 890584 ATTTTTTCATTCTCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTG 890525
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||||| || | | |||||| | |||||| ||| |||| | |
Sbjct 890524 CCTGAAAACAGCGGCGTTTCAAGAGGAGGATGTATTTTGTCAGTCCCCATGTTTGTCAGC 890465
Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593
|||| | || ||||| ||| | ||| ||||||| | | ||| || | |
Sbjct 890464 TTTCCAT-TA--ACCAC-TGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCAT 890409
Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653
| ||||| ||||| |||| ||| || | ||| |||| | || || || ||
Sbjct 890408 TTTCTCGGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAG 890349
Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713
||||| |||| ||||| || | ||||||||||| || | || ||||| | | ||
Sbjct 890348 GTTGGTTTTAATCGGAAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACT 890289
Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
| | ||| || ||||| | ||||| | || ||||| || || |||||||| || ||
Sbjct 890288 CATTTTGTAGAGGTCCTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATA 890229
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
||| || ||||||| |||| ||||| || || |||||| || | || || ||
Sbjct 890228 CACCACACTCTCCAGTTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAAT 890169
Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
||| | ||| | || || || | ||| | || ||||| | |||||| | ||||
Sbjct 890168 CACTG-CAGCCAAAAAGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTC 890111
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
||||| |||||||||||||| | || |||| ||| || || || || || |||||
Sbjct 890110 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACT 890051
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011
|||||||| ||||| || ||||| ||||| || ||| || | || || ||| |||
Sbjct 890050 ATAGAATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTG 889991
Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
|| | | | | || || ||||| || |||||||| ||||||
Sbjct 889990 CGCTTCTTGATGAAAGCAGCACAATCACTGGTCATGTTGACGTAG 889946
>seq414
Length=6018750
Score = 197 bits (218), Expect = 2e-45
Identities = 237/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| || || || || || || ||||| ||||| || | |
Sbjct 4933226 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 4933285
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| || || ||||||| |||||| ||||| || || | || || || |||
Sbjct 4933286 ACTTGTAACACCCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 4933345
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| ||||| || ||||| | | |||||| || | ||||||||| ||||| || || |
Sbjct 4933346 GTCCCAGTTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 4933405
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||||| ||| ||||||||| ||||| |||||| || || ||||| || || |
Sbjct 4933406 TCTCGCTGAAGGTGATCATGTTTTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 4933465
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || ||||||| | |||| |||||||| |||||||| ||||||||||||| |
Sbjct 4933466 TCAAGACTTCTTGGGGATTTTGCAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCT 4933525
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||| | || || || |||||
Sbjct 4933526 CTCTTACATCCTGGGTCACCAC 4933547
Score = 114 bits (126), Expect = 1e-20
Identities = 162/226 (72%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|| |||| ||| || || |||||||||| || | || | ||| ||||||||||
Sbjct 4930628 ACCGTTTCCCTGTAGTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGATCACCTCCT-- 4930685
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||||| || || ||||| || || || ||||| || |||||||| |||||
Sbjct 4930686 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGATGTTGTCCCA 4930744
Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679
|| | ||| |||| | | |||||| || || || || || || | || |||||
Sbjct 4930745 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCCCCGACCCAGAGACCTTCCAG 4930801
Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
| || ||||| ||||| | |||| | ||||||||||| || ||||
Sbjct 4930802 GAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4930847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578196484180800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |