Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq469 105 4e-18 seq99 82.4 5e-11 >seq469 Length=2995260 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || || ||||| | ||||| || |||||| || || || |||||||| || | Sbjct 1051328 CACCTCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 1051387 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | | Sbjct 1051388 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 1051447 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || ||| || | | | || | |||||| || | ||| Sbjct 1051448 GGATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 1051506 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1051507 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 1051558 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1051617 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 1051618 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1051677 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 1051678 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 1051736 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1051737 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 1051786 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1051845 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 1051846 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1051905 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 1051906 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 1051964 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1051965 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 1052014 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1052073 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 1052074 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1052133 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 1052134 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 1052192 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1052193 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 1052375 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1052434 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 1052435 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1052494 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 1052495 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 1052553 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1052554 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 1052603 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1052662 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 1052663 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1052722 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 1052723 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 1052781 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1052782 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829 >seq99 Length=2554289 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || ||| || || ||||||||||| || Sbjct 1822263 ACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 1822322 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || || || || | |||||||| || | || Sbjct 1822323 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGG 1822382 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| || | || | ||||||||| | |||| Sbjct 1822383 GATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTAGGCTCCA 1822441 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || || ||||||||||| Sbjct 1822442 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1822490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328573509956160