Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq251 338 7e-88 seq414 293 3e-74 seq25 181 1e-40 seq756 172 6e-38 seq3359 134 2e-26 seq61 105 8e-18 seq291 86.0 7e-12 >seq251 Length=3596318 Score = 338 bits (374), Expect = 7e-88 Identities = 503/705 (71%), Gaps = 9/705 (1%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || |||||||| ||||| || | || | | | ||||| |||||||| ||||| | Sbjct 284270 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTG 284329 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || || ||||| | ||| || || |||| ||||| |||| ||| || ||||| ||||| Sbjct 284330 TGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCT 284389 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || | ||| || | ||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 284390 GTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCC 284449 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||||||||||| || |||| || ||||||||||| || ||||| |||| ||||||| Sbjct 284450 AGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAG 284509 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGGCAGGTCCGCGGGGTTCCA 147170 |||||||| ||| ||||| ||||| || ||| || ||||| |||| || ||||| Sbjct 284510 AACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTGAGCGGG-AGGTGTTTTGGATTCCA 284568 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT 147230 ||| | | | | | ||| | ||||| | || || || | ||| | Sbjct 284569 GGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTG 284628 Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTG-TCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||| ||||| || || | ||| || | || ||| | || |||| |||||||| Sbjct 284629 CAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTA-TCTTCGTATTCGGCCCCAA 284687 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 | ||||||||||| |||| ||| ||||| || || || || | |||| ||||| | Sbjct 284688 AATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCC---TTCTCTGGTGGAGAATC 284744 Query 147350 CC-GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCG 147408 || | | | ||| | | ||||||| | |||||||||||| ||||||||||| Sbjct 284745 CCAGGCTGTCCAAGACGC-CTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAA 284803 Query 147409 GAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCC 147468 || |||||||||| || ||||| ||| ||| ||||| |||| ||||||||||| ||| Sbjct 284804 GACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCC 284863 Query 147469 CTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCC 147528 |||| || || | ||||| || ||||| || || | || || || || | |||| Sbjct 284864 TTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCC 284923 Query 147529 TGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 || || ||||| ||||| ||||| |||||||| | ||| ||| Sbjct 284924 TGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCAGTCGTCC 284968 >seq414 Length=6018750 Score = 293 bits (324), Expect = 3e-74 Identities = 257/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | || ||||||||| || ||||| | | ||||| ||| Sbjct 4933547 GTGGTGACCCAGGATGTAAGAGAGCCGCTGAACACACCTGCCTCTTTAAGCTGCTCTCTG 4933488 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | || || || ||||||| || ||||| ||||||||| | | || || Sbjct 4933487 CAAAATCCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAA 4933428 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||| | |||| ||||| || |||||||| || |||||||||||| Sbjct 4933427 AACATGATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 4933368 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||||||| || |||||| ||||||||||| || || |||||||||||||| Sbjct 4933367 ATAAACATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 4933308 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 4933307 GAGGATGAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 4933248 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || ||||||||||||||||| Sbjct 4933247 GTAGCCTGCCTCACCCTCTC 4933228 Score = 208 bits (230), Expect = 9e-49 Identities = 215/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || ||||||| || || || || || ||||| | ||| |||||||| || |||| Sbjct 4930898 TCCCAGTACAGCCCAAAGTTTTCCTTCACTACAAATTCTCTGAAGACCACCTAAATATCA 4930839 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||| ||||| | ||| ||| | |||||| | || ||||| | | Sbjct 4930838 CTTGCTCTGCCAATGCTCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCGGGGA 4930779 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| ||| |||| || || | ||||| || || ||||| ||||| | | Sbjct 4930778 TTGAGAACAGTACTGAGATTCTCTCACACCCCAATGGGACAACATCTGTCACCAGCATCC 4930719 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| |||||||| ||| | ||| Sbjct 4930718 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGTACC 4930659 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || |||| |||||||| || | ||| |||| Sbjct 4930658 TGGGGACTGTGACCAACTACAGGGAAACGGTGAACAAAGGTA 4930617 >seq25 Length=14465811 Score = 181 bits (200), Expect = 1e-40 Identities = 144/172 (84%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||| |||||||||| ||||||||||| |||||||| Sbjct 2982280 CTTCAGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 2982339 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||||||||||| || ||||| |||| Sbjct 2982340 GGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTT 2982399 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGG 147152 ||||||| |||||||| ||| |||||| ||||| || |||||| ||||| Sbjct 2982400 CACCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGG 2982451 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||||||||| |||||||| || |||||||| || || || || || || | |||| Sbjct 2985542 GGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCTCTGGT 2985601 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | || || ||||||| | |||||||||||| |||||| Sbjct 2985602 GGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTCACTCC 2985661 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||||| || |||||||||| || ||||| ||| ||| || Sbjct 2985662 CTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTGGAGGA 2985702 >seq756 Length=2993967 Score = 172 bits (190), Expect = 6e-38 Identities = 137/167 (82%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 528811 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 528870 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| ||||||||||| |||| Sbjct 528871 TGCCGCAGGCGGAGAACCAC------------GGCCCTGACATCAAGGAGCATGTGAACT 528918 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| ||| |||||||||| || ||| Sbjct 528919 CCCTGGGGGAGAAGCTGAAGACCCTCAGACTGAGGCTGCGTCGCTGT 528965 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| ||||| || |||||||| ||||||||||| || || ||||| ||||||| Sbjct 531157 AGCTCCAAGAGAAGGGGGTCTACAAAGCCATGAGTGAGTTCGACATCTTTATCAACTACA 531216 Query 178522 TAGAAGCTTACATGACAACaaaaatga 178548 ||||||| |||||||||| || |||| Sbjct 531217 TAGAAGCCTACATGACAATGAAGATGA 531243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||| Sbjct 528511 CAAATGAAGGACCAGCTGGACAACATGCTGTTGACCAGGTCCCTGCTGGAGGACTTTAAG 528570 Query 178233 G 178233 | Sbjct 528571 G 528571 >seq3359 Length=23808 Score = 134 bits (148), Expect = 2e-26 Identities = 214/299 (72%), Gaps = 16/299 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| || |||||||| ||| ||| ||||||| ||||| Sbjct 14214 GTACTCCCTGGTATTTGTCATTGGCCTGATTGGCAACATCCTAGTGGTCCTAGTTCTCAT 14273 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 14274 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 14333 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGG-T 8787 |||| | | | ||||| || ||||| |||||| ||| | | || || ||||| | Sbjct 14334 CCTGATCTTCCTCTTCACACTGCCCTTCTGGATTGACTACAAGCTGAAGGATGACTGGAT 14393 Query 8788 GGGTGGGACGCCGACCACCACATGTGTAAGTTTAT-AGTGGGC-CT-TTGCAACGTGGCA 8844 |||| | |||||||||||||| | ||||| || || || |||| Sbjct 14394 TTTTGGG--------GATCACATGTGTAAGTTGCTCTCTGGGCTCTATTTCA--TTGGC- 14442 Query 8845 CTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||||||| || || | || ||||||||| | || | |||||||| || || ||||| Sbjct 14443 TTGTACAGTGAGATCTTCTTCATCATCCTGCTCACCATTGACAGGTACCTGGCTGTTGT 14501 >seq61 Length=1472917 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||| | |||| || | ||||| | ||||| | | |||| | Sbjct 30740 GTACTCCTTGGTGTTCGGGGTTGGCCTGCTGGGCAACGTGGTGGTGCTGATGATCCTTAC 30799 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||||||||||||||| |||| ||||||||||| || ||| Sbjct 30800 AAAATACAAGAGGCTCCACATCATGACCAACATCTACCTGCTCAACCTGGCCGTTTCTGA 30859 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||| || || || |||||||||| Sbjct 30860 CCTGCTTGTCCTGCTCACGCTGCCGTTCTGGATTCACT 30897 >seq291 Length=4377177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||| ||| ||||||| || |||| ||| | ||||| | || || || | Sbjct 3551286 TACTCCTTGGTCTTTCTGTTTGGCCTGCTTGGAAATTCTGTGGTGGTTCTGGTTCTGTTC 3551227 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 ||||||||| |||||| | ||||||| || | | |||| ||||||||||| | ||| Sbjct 3551226 AAGTACAAGCGGCTCAAGTCCATGACCGACGTGTACCTGCTCAACCTGGCCATCTCGGAC 3551167 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | || | |||||||| ||| Sbjct 3551166 CTGCTCTTCGTGCTCTCGCTCCCCTTCTGG 3551137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250425567200