Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq317 129 8e-25 seq48 118 1e-21 seq279 113 6e-20 >seq317 Length=3209840 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||||||||| || ||||| || || ||||| | Sbjct 2108762 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 2108703 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 2108702 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 2108643 Query 39759 CAACAA 39764 | |||| Sbjct 2108642 CTACAA 2108637 >seq48 Length=13907917 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| || ||||| || |||||||| || ||||| | || Sbjct 107469 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107528 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 107529 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107588 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 107589 TTTCTTATACCAT 107601 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 127498 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 127557 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 127558 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 127617 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||||||| | ||| || || || | || | ||||| || |||||||||| Sbjct 127618 CTAATTCCACAGTAGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 127668 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | || ||||| || || || ||||| || |||||||| || | Sbjct 123059 TAGTGCCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGT 123118 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||| ||||||||||| | || ||||| | ||||| || | | || | ||||| Sbjct 123119 TGTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCA 123178 Query 70109 ACATATGCTGAGGTC 70123 |||||||||| |||| Sbjct 123179 ACATATGCTGTGGTC 123193 >seq279 Length=9007507 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| ||||| |||||||| ||||| | ||| || Sbjct 4426775 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 4426716 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| ||||||||||| || || ||||| || ||||| || || ||||| || Sbjct 4426715 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 4426656 Query 39761 AC 39762 || Sbjct 4426655 AC 4426654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686629116495720