Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq251 158 1e-33 seq2246 120 2e-22 seq317 111 1e-19 seq279 86.0 5e-12 >seq251 Length=3596318 Score = 158 bits (174), Expect = 1e-33 Identities = 281/410 (69%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||| ||||| || || || || | ||||||| | | |||||||| || |||| || Sbjct 284730 GAAGGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAA 284671 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 || | | || |||||| | |||||| | || ||| | ||| || | || || Sbjct 284670 GATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACA 284611 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| || | || || | || | || || |||| || ||||| |||| || | Sbjct 284610 ATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTC 284551 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | | ||| | || || || ||| | || ||||| ||||| || ||||| Sbjct 284550 CCGCTCACGGCCCTCCCGCCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAG 284491 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 ||||| || || ||||| | | ||||| |||||||| || || || || || ||||| Sbjct 284490 CTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATC 284431 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || || || |||||||||| || |||||||||||| | || | || || ||||| Sbjct 284430 GCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGAC 284371 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 |||| ||||| || ||||||| ||| |||||| | ||||||| ||||| Sbjct 284370 CTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCC 284321 >seq2246 Length=1060343 Score = 120 bits (132), Expect = 2e-22 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTT-AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGA 47274 ||| |||| ||||| |||| | || | || | || ||| | ||||||| || || || Sbjct 384990 GTGCTGCAGTTTTTTAGGATTGCATAAGGAAACTGGTAAATTGGTATTTCTTGGATTGGA 384931 Query 47275 CAATGCAGGAAAAACGGCATTACTCCACATGCTCAAAT-ACAATTGCATGAAAGAGCATA 47333 |||||||||||||| ||||||| |||||||| | || ||| | | | | ||| Sbjct 384930 TAATGCAGGAAAAACAACATTACTACACATGCTAAGATGACA---GACTTGGACAACATG 384874 Query 47334 ACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACAT 47393 ||| || |||||||| || || ||| ||||||| ||||| |||||||| |||| || | Sbjct 384873 TCCCAACGTTACATCCCACTTCAGAAGAACTAACCATTGCCGGCATAACCTTTACAACTT 384814 Query 47394 TTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATG 47447 ||||| | || | || |||||| || ||| ||||| |||| || ||| || Sbjct 384813 TTGATCTGGGTAGGCATGCTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTG 384760 >seq317 Length=3209840 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 2106530 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 2106588 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 2106589 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTACATTAAAGAT 2106646 >seq279 Length=9007507 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 4436077 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 4436136 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 4436137 AACGAGTTTCAGAGTATCAGCG 4436158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397298216550865