Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq251 158 1e-33
seq2246 120 2e-22
seq317 111 1e-19
seq279 86.0 5e-12
>seq251
Length=3596318
Score = 158 bits (174), Expect = 1e-33
Identities = 281/410 (69%), Gaps = 0/410 (0%)
Strand=Plus/Minus
Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922
||||| ||||| || || || || | ||||||| | | |||||||| || |||| ||
Sbjct 284730 GAAGGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAA 284671
Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982
|| | | || |||||| | |||||| | || ||| | ||| || | || ||
Sbjct 284670 GATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACA 284611
Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042
|| ||| || | || || | || | || || |||| || ||||| |||| || |
Sbjct 284610 ATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTC 284551
Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102
| | | ||| | || || || ||| | || ||||| ||||| || |||||
Sbjct 284550 CCGCTCACGGCCCTCCCGCCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAG 284491
Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162
||||| || || ||||| | | ||||| |||||||| || || || || || |||||
Sbjct 284490 CTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATC 284431
Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222
|| || || |||||||||| || |||||||||||| | || | || || |||||
Sbjct 284430 GCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGAC 284371
Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272
|||| ||||| || ||||||| ||| |||||| | ||||||| |||||
Sbjct 284370 CTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCC 284321
>seq2246
Length=1060343
Score = 120 bits (132), Expect = 2e-22
Identities = 169/234 (72%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 47216 GTGTTGCAATTTTT-AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGA 47274
||| |||| ||||| |||| | || | || | || ||| | ||||||| || || ||
Sbjct 384990 GTGCTGCAGTTTTTTAGGATTGCATAAGGAAACTGGTAAATTGGTATTTCTTGGATTGGA 384931
Query 47275 CAATGCAGGAAAAACGGCATTACTCCACATGCTCAAAT-ACAATTGCATGAAAGAGCATA 47333
|||||||||||||| ||||||| |||||||| | || ||| | | | | |||
Sbjct 384930 TAATGCAGGAAAAACAACATTACTACACATGCTAAGATGACA---GACTTGGACAACATG 384874
Query 47334 ACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACAT 47393
||| || |||||||| || || ||| ||||||| ||||| |||||||| |||| || |
Sbjct 384873 TCCCAACGTTACATCCCACTTCAGAAGAACTAACCATTGCCGGCATAACCTTTACAACTT 384814
Query 47394 TTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATG 47447
||||| | || | || |||||| || ||| ||||| |||| || ||| ||
Sbjct 384813 TTGATCTGGGTAGGCATGCTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTG 384760
>seq317
Length=3209840
Score = 111 bits (122), Expect = 1e-19
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||
Sbjct 2106530 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 2106588
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 2106589 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTACATTAAAGAT 2106646
>seq279
Length=9007507
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 4436077 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 4436136
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 4436137 AACGAGTTTCAGAGTATCAGCG 4436158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397298216550865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |