Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq251 145 6e-30 >seq251 Length=3596318 Score = 145 bits (160), Expect = 6e-30 Identities = 484/740 (65%), Gaps = 26/740 (4%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| |||||||| | || || |||| | |||||| Sbjct 284172 AAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGC-CTTCAATCTGAAAGTCT 284230 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || | ||| | ||||| |||| ||||| || || || || || Sbjct 284231 TCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAGGC 284290 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| | |||||| | || | |||| ||||||| | |||| || ||| Sbjct 284291 CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCA 284350 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | | || | |||| || || |||||||||||||||||||| Sbjct 284351 TCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAG 284410 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| ||| ||| || || ||||| || ||||| || |||||||| ||||| || | Sbjct 284411 GTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGC 284470 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 | ||| ||||| || || || | | | ||| || || || ||||| |||| || Sbjct 284471 TCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAG 284530 Query 111922 GGAGGCAATGCCAT----CCCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCT 111977 || || | ||| | | | || | ||| ||||||||||| || ||||| Sbjct 284531 GGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGAT-TCCAGGCACACATGATGATTCTTCT 284589 Query 111978 G-CTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTAC 112036 | | ||| | | | || | ||| || | || ||| || ||||||| ||||| | Sbjct 284590 GTCATTAGGGTTGGTTTTGATTGT-GTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGC 284648 Query 112037 CAGTATAATCCGCCTGACATCCAGT------GTATGTTGCCCCATAGTGTCTCCATTGGA 112090 | | ||||| |||| |||| || |||| |||||| | || ||||| || | Sbjct 284649 CTGAATAAT----CTGA-ATCC-GTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAA 284702 Query 112091 ATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGA-AATTGCTCTCTATTCAAC 112149 | | || | || || |||||||| || | |||| ||| | || | ||| Sbjct 284703 AGCGGTATACTGGGCCTAGATCTCC---TTCTCT-GGTGGAGAATCCCAGGCTGTCCAAG 284758 Query 112150 AAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCA 112209 | | | || | | ||| || |||||||| || || || | ||| | || Sbjct 284759 ACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 284818 Query 112210 TTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTT 112269 ||||||||||| | |||||||| |||||||| |||| ||| || |||||| | || | | Sbjct 284819 TTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGT 284878 Query 112270 TTAGTAGTTAGCAGTGGaaa 112289 || || || ||||||||||| Sbjct 284879 TTGGTTGTGAGCAGTGGAAA 284898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391790004088399