Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq780 100 3e-16 seq279 98.7 1e-15 seq546 86.0 7e-12 >seq780 Length=1394479 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 252319 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 252260 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 252259 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 252200 Query 152149 ATCGT 152153 || || Sbjct 252199 ATGGT 252195 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 252319 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 252260 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 252259 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 252200 Query 117425 ATCGT 117429 || || Sbjct 252199 ATGGT 252195 >seq279 Length=9007507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | |||||||||||||| || | ||||| Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 ||| |||||| || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658 Query 74890 CGAC 74893 | || Sbjct 4426657 CCAC 4426654 >seq546 Length=4386525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||||||||||| ||||| || ||| || || || || || Sbjct 2376016 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCCCCGTGAAGCCGAGTTCCAAACTGA 2376075 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| || ||||||||||||||||| || ||| Sbjct 2376076 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCTACAAAGTTTTGAGCCAAATTCACA 2376135 Query 117425 ATCGT 117429 || || Sbjct 2376136 ATAGT 2376140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546993194165400