Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq119 150 2e-31 seq615 147 2e-30 seq99 140 4e-28 seq469 132 5e-26 seq164 131 2e-25 seq205 114 1e-20 seq89 102 9e-17 seq1095 98.7 1e-15 seq780 86.0 7e-12 >seq119 Length=227305 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||| ||||| || | |||||||| || || |||||||||||| | || Sbjct 86859 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 86800 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| || ||||||||||| || || || |||||| Sbjct 86799 GACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 86740 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||||| | || || || ||||||| ||| || | | ||||||| ||| Sbjct 86739 CAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTCCATCAGACTACAAT 86680 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || || ||||| || || Sbjct 86679 ATTCAGAAAGAGTCCACCCTGCA 86657 >seq615 Length=2269971 Score = 147 bits (162), Expect = 2e-30 Identities = 171/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 1647328 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 1647387 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| |||||||||||||| || || || || ||| Sbjct 1647388 GACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCAG 1647447 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT---AT 27582 |||||||| ||||||| || || || || ||||||| | || || |||||| || Sbjct 1647448 CAGCGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACAAT 1647507 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | | || ||||| ||||| || || |||| ||||| | ||||| Sbjct 1647508 ATTCTTCAGAAGGAGTCCACCCTGCACTTAGTGCGTCGTCTGTGAGGTGG 1647557 >seq99 Length=2554289 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 1822262 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 1822203 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || ||||| |||||| Sbjct 1822202 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1822143 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || || | || || || Sbjct 1822142 CAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1822083 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| ||||||| | ||||| Sbjct 1822082 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 1822036 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || |||||||| || || || ||||| ||| | | Sbjct 1822491 AATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCTAG 1822432 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || ||||| ||||| || || ||||| ||||| Sbjct 1822431 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1822372 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || || ||||| || || |||| || || || | || || || Sbjct 1822371 GCAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1822312 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| ||||||| | ||||| Sbjct 1822311 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 1822264 >seq469 Length=2995260 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 1051556 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051497 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 1051496 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1051437 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 1051436 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1051377 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||| |||||||||||||| || | ||| ||||| Sbjct 1051376 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGT 1051341 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 1051784 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051725 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 1051724 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1051665 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 1051664 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1051605 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 1051604 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 1051567 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 1052012 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051953 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 1051952 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1051893 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 1051892 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1051833 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 1051832 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 1051795 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 1052240 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052181 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 1052180 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1052121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 1052120 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1052061 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 1052060 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 1052023 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 1052601 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052542 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 1052541 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1052482 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 1052481 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1052422 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 1052421 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 1052384 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 1052829 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052770 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 1052769 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1052710 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 1052709 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1052650 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 1052649 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 1052612 >seq164 Length=6526486 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || || ||||||||||| || || ||||||||||| | Sbjct 3962499 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 3962440 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || |||| ||| | ||||||||||| || || || |||||| Sbjct 3962439 GACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAG 3962380 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| ||||| | || || || || ||||||| ||||| || |||| || || Sbjct 3962379 CAGCATCTCATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGAT 3962320 Query 27586 GTCCAAAAGGAATCCAC 27602 || || || || ||||| Sbjct 3962319 GTTCAGAAAGAGTCCAC 3962303 >seq205 Length=8045950 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||| | || || || | ||||||| | || Sbjct 434893 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGGCCATCACCCTCG-GGTTGAGCCCAGT 434835 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || ||||||| || ||||||||||| || || || |||||| Sbjct 434834 GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCGCCTGACCAG 434775 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||| ||| |||||||| || || || || ||||| Sbjct 434774 CAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGA 434740 >seq89 Length=3644534 Score = 102 bits (112), Expect = 9e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 27413 TCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCA 27472 ||||||| |||| || | |||||||| | || || ||||||||| | |||| | || Sbjct 1710632 TCTTTGTGAAGAGCCTGATGGGCAAGACCCTCACCCTCGAGGTTGAGCCCTGTGACACCA 1710691 Query 27473 TTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTC 27532 || ||| | | |||||||| | ||||||||||| || || || ||||||||||||| Sbjct 1710692 CTGAGAATGTCAGAGCTAAAATCAAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTC 1710751 Query 27533 TAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 | | ||| || || | || || || || | || |||| ||||||| ||| | || | Sbjct 1710752 TGAGTTTCGCGGGCGAACAGCTGGATGAGGGCCGCACCCCGTCAGACTAGAATATTCAGA 1710811 Query 27593 AGGA 27596 |||| Sbjct 1710812 AGGA 1710815 >seq1095 Length=2017159 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 1773861 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1773920 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 1773921 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 1773964 >seq780 Length=1394479 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 252195 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 252254 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 252255 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 252314 Query 32245 TTCAC 32249 ||||| Sbjct 252315 TTCAC 252319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570078190991760