Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq170 129 8e-25 >seq170 Length=4243350 Score = 129 bits (142), Expect = 8e-25 Identities = 584/919 (64%), Gaps = 19/919 (2%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| ||||| ||| || Sbjct 890019 GAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATCGAAATGCTC 890078 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 890079 GACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAAA 890138 Query 13803 AAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || || ||| || | | | || || || | ||| || || ||| |||| Sbjct 890139 AAATC---CGAGGAATCCTTTTTGGCTGCAGTGATTGGCATTGCGTCTTGTTTCAGTAAC 890195 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || ||||| | ||| | |||||||| | ||| ||||| || || ||||| Sbjct 890196 GTTTTTGTGGCCAGGCAACTGGAGAGTGTGGTGTATGCCTCGTGGAGCCGGGTTCAGGCT 890255 Query 13920 GACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 ||| ||| ||||||| |||||| || | | |||| |||| || |||| Sbjct 890256 GACATCAACTGCATGCAGGACCTCTACAAAATGAGTGCGGACTGGAAGTACTTGATCAAT 890315 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCC 14039 || ||||| ||||| || ||| | || ||||||||||| || || || ||| ||| | Sbjct 890316 CTCTGCGGTATGGATTTTCCGATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTCG 890375 Query 14040 CTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATC 14099 | ||| ||||| ||| || | |||| |||||| ||| || | | Sbjct 890376 TTAATGGGCGAGAACAACCTAGAAACCGAGAAAATGCCCGCCCATAA---AAAAGAAAGG 890432 Query 14100 AGGAAGAGGCACGTGGTGGCCAGCGG----CGGCGTGGTGGTCAACACCGGCAGGAACAA 14155 |||| | |||| | ||| || || | || |||| || | |||| Sbjct 890433 TGGAAAAAGCAC----TATACAGTGGTTAATGGAAAGCTGACAAACATGGGGACTGACAA 890488 Query 14156 GGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCG 14215 | || || || | || | ||| | || | ||| || |||| ||||| | Sbjct 890489 AATACATCCTCCTCTTGAAACGCCGCTGTTTTCAGGCAGCGCCTATTTTGTGGTCAGTAG 890548 Query 14216 GGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGA 14275 | ||| |||| || || || || | || | | | ||| | ||| | Sbjct 890549 GAAGTATGTGGGCTATGTGCTTGAGAATGAAAAAATCCAGAAGTTTATGGAGTGGGCAAA 890608 Query 14276 GGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCC 14335 || || |||||||| |||||| | || |||||||| | ||||| ||| | | | || Sbjct 890609 AGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAGGATG-CCTGAAGTCC 890667 Query 14336 CGGGGGGATCCCCGTTCACGTC-AAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | | || | || |||||||||| || |||||| | | | ||||| Sbjct 890668 CAGGCTCACTGTCCTTAAGTTCTAAGTACGACATGTCAGACATGCACTCTATTGCCAGGT 890727 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | || |||||||| |||| || || || | || || |||| |||||||| ||| Sbjct 890728 TTGTTAAGTGGCAGTACTTTGAAGGTGACGTTTCCAAGGGCGCCCCCTACCCGCCGTGCA 890787 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 |||||||||||| | | | | || | ||||| |||| ||| |||| ||| || | Sbjct 890788 GCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCCGGTGACTTGAACTGGATGCTGC 890847 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCT 14574 ||| | |||||||| ||||| ||||| ||| || | ||| || ||| | | | Sbjct 890848 ACGTGCACCACCTGTTTGCCAATAAGTTTGACACAGACATAGACTTCTTTGCCATCCAGT 890907 Query 14575 GTCTGGACGAGGACGTGCG 14593 || |||||||| | |||| Sbjct 890908 GTTTGGACGAGCATCTGCG 890926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658470986100480