Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq251 324 1e-83 seq25 147 2e-30 seq2246 95.1 1e-14 seq91 87.8 1e-12 >seq251 Length=3596318 Score = 324 bits (358), Expect = 1e-83 Identities = 485/687 (71%), Gaps = 4/687 (1%) Strand=Plus/Plus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 |||||||| || || || | | ||||| | ||||| || || || || |||||| Sbjct 284282 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 284340 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 | ||| || ||||||| |||| |||| || || || | || || |||| ||| || Sbjct 284341 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 284400 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 |||||||| ||||| |||||||||||||||||||| ||||| || || || |||||||| Sbjct 284401 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 284460 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078 || |||| || || ||||| || || ||||| |||| |||||| ||||| || | Sbjct 284461 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 284520 Query 30079 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30138 ||| ||||| || || || ||| |||| | || ||| || |||||||| |||| ||| Sbjct 284521 GGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 284580 Query 30139 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30198 ||| | ||||| | |||||| | |||| ||| | || ||||| || || || Sbjct 284581 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 284640 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 || | || || || |||| | | || ||| || || || |||||||||||||| Sbjct 284641 TCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTG 284700 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30318 || | ||| || || || || |||| |||| ||| ||| ||| ||||||| Sbjct 284701 AAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCAA 284757 Query 30319 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGA 30378 | | ||| ||| || |||||||||||||| || || ||||| ||| ||||| || | Sbjct 284758 GACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 284817 Query 30379 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30438 ||||||||| || ||| |||||||||| ||||||| || ||||||| || || | Sbjct 284818 GTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACG 284877 Query 30439 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 30498 ||||| ||||| || ||||| | | |||||| ||| | ||||| || ||||| Sbjct 284878 TTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACAC 284937 Query 30499 GGACAAGACTCCCGTGCCCGTCCTGTC 30525 |||| | || |||||||| | ||| Sbjct 284938 CGACAGGGTGCCGGTGCCCGTGCAGTC 284964 >seq25 Length=14465811 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||| | ||||| || ||||||||||||||||| ||||| Sbjct 2982284 AGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 2982343 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| | Sbjct 2982344 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 2982403 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 2982404 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 2982447 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||| || || ||||| ||||| || || || Sbjct 2985527 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 2985586 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| ||||| ||| ||| ||| ||||||| ||||||| ||| || |||||||| Sbjct 2985587 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 2985646 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 2985647 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 2985694 >seq2246 Length=1060343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 110437 |||| |||| || || || || | || || ||||| |||| || || ||||| | Sbjct 252848 ATGATCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTT 252907 Query 110438 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 110497 | | ||||| |||||| || | ||||||||||| ||||||||||| || ||||||| | Sbjct 252908 TTAAAGGTCGATTCTTCTCTAGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAAT 252967 Query 110498 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 110557 |||| || ||| |||||||| | | ||||| | || | ||||| || || | Sbjct 252968 TCTGTTTACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCC 253027 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 110612 ||| || ||||| |||| || | ||| || ||||| |||||| ||||| Sbjct 253028 TGAGT------GGGTGCCAGTGCAGGTCCCTGTTCTTGCCGATACCCATGTTCTGG 253077 >seq91 Length=16929213 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| || | || || ||||| | | ||||| |||||| || || Sbjct 15942614 TTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 15942673 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| |||||||||||||| ||||||| || ||||| ||| Sbjct 15942674 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGCTTACCT 15942721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406149101500716