Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq251 410 1e-109
seq25 159 3e-34
seq892 138 1e-27
>seq251
Length=3596318
Score = 410 bits (454), Expect = 1e-109
Identities = 555/771 (72%), Gaps = 3/771 (0%)
Strand=Plus/Plus
Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546
||||| |||||||||| ||||| || | || ||||| | ||||| || || |
Sbjct 284263 TCGAAGCATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGG 284322
Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606
||| |||| |||||||| || || ||||| ||||| || || || || || || ||
Sbjct 284323 CTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTT 284382
Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666
|| || || || || |||||||| |||||||||| ||| || || |||||||| ||
Sbjct 284383 CAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGG 284442
Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726
||| || | ||||||||||| || || | ||| ||||||||||||||||| || ||| |
Sbjct 284443 CACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCAC 284502
Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786
|||||||| ||||| |||| ||||| || ||||| ||| | || ||||| | || ||
Sbjct 284503 CACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGG 284562
Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846
||||| || ||||| | ||| |||||||||| |||||| || | ||||| ||||
Sbjct 284563 ATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCAC 284622
Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906
| |||||| ||||| |||| | || ||||| || | || | | || || ||
Sbjct 284623 CTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGC 284682
Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966
|||||| || |||||||| || | ||| || ||||| | || ||| ||| | | |
Sbjct 284683 CCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATC-TCCTTCTCTGGTG--GA 284739
Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026
||| ||| | |||||| | | |||| ||||| | ||||||||||| ||||| |||
Sbjct 284740 GAATCCCAGGCTGTCCAAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTT 284799
Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086
||| || |||||||| | ||| |||| ||| | | |||||||||| ||||| | ||
Sbjct 284800 GGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAAC 284859
Query 7087 GCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCG 7146
||||||||| | |||||||| || || ||||| |||||||| | | ||| |||| ||
Sbjct 284860 ACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCG 284919
Query 7147 GGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206
||||| |||||||||| || ||||| || || || || | ||| |||||||| ||||
Sbjct 284920 CGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCAGTCGTCCTTCCGGGAGCC 284979
Query 7207 CTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGG 7257
| |||||| | | ||| || |||||| |||||| |||||
Sbjct 284980 GCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTGCGG 285030
Score = 410 bits (454), Expect = 1e-109
Identities = 555/771 (72%), Gaps = 3/771 (0%)
Strand=Plus/Minus
Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147
||||| |||||| |||||| || ||| | | |||||| | |||| ||||
Sbjct 285030 CCGCACGGGGAGCTGCAGTACTTGGGGCAGATTAAGTACATCCTCCGCTGCGGCTCCCGG 284971
Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207
|||| ||| | || || || || ||||| || |||||||||| ||||| || |||| |
Sbjct 284970 AAGGACGACTGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGC 284911
Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267
|| | | |||||||| ||||| || || |||||||| | ||||||||| || | |||
Sbjct 284910 CTCAGAGATGAATTTCCACTGCTCACAACCAAACGTGTTTTCTGGAAGGGTGTTTTGGAG 284851
Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327
|| |||||||||| | | ||| |||| ||| | |||||||| || ||| ||| |||
Sbjct 284850 GAATTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTG 284791
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387
|| ||||||||||| | ||||| |||| | | |||||| | ||| ||| | | |
Sbjct 284790 AAAATCTGGGACGCCAATGGGTCCCGAGGCGTCTTGGACAGCCTGGGATTCTC--CACCA 284733
Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447
||| ||| || | ||||| || ||| | || |||||||| || |||||||| || ||
Sbjct 284732 GAGAAGGA-GATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATAC 284674
Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507
| | || | || ||||| || | |||| ||||| |||||| | |||| |||
Sbjct 284673 GAAGATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGAC 284614
Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567
|| | || |||||| |||||||||| ||| | ||||| || ||||| || || |
Sbjct 284613 ACAATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACAC 284554
Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627
||||| || | ||| ||||| || ||||| |||| ||||| |||||||| | ||| ||
Sbjct 284553 CTCCCGCTCACGGCCCTCCCGCCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGT 284494
Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687
||||||||||||||||| ||| | || || ||||||||||| | || ||||| ||||||
Sbjct 284493 GAGCTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAAC 284434
Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747
|| || || ||| |||||||||| |||||||| || || || || || || ||
Sbjct 284433 ATCGCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGT 284374
Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807
|| || || || || ||||| ||||| || || |||||||| |||| |||| ||
Sbjct 284373 GACCTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCCACTGAAA 284314
Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858
|| ||||| | ||||| || | || ||||| |||||||||| |||||
Sbjct 284313 ATGCAGCTTCCGCGAGAACCAAGGCCTTTCCCGAAGCTCAAAATGCTTCGA 284263
>seq25
Length=14465811
Score = 159 bits (176), Expect = 3e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||| | |||||||| | ||| || || |||||||| ||||| || | |||
Sbjct 2982296 TGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 2982355
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||| || || || ||||||||||||||||| || ||| | |||||||| |||
Sbjct 2982356 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 2982415
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|| |||| |||||| || ||||| ||||| || ||||||||
Sbjct 2982416 CAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 2982456
Score = 159 bits (176), Expect = 3e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
|||||||| || ||||| ||||| || |||||| |||| ||||| |||||||| | |||
Sbjct 2982456 GATCTCCCGCTCATGGCCCTCCCGCCCTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 2982397
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| || || || |||||||||||||| | || ||||| |||
Sbjct 2982396 GGTGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 2982337
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||| | |||||||| | ||||||||| ||
Sbjct 2982336 AACATCGCCAGCTACTCCCTGCTCACCTGCATGATCGCACA 2982296
Score = 102 bits (112), Expect = 7e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||| || || ||||| |||||||| | || || || ||
Sbjct 2985537 TATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCT 2985596
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||| ||| | |||||| |||||||| ||||| | ||||||||||| |||
Sbjct 2985597 CTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTC 2985656
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || |||||||| | ||| ||||
Sbjct 2985657 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 2985690
Score = 102 bits (112), Expect = 7e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | ||||| |
Sbjct 2985690 CCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGGGTCCC 2985631
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
||||||| |||||| | ||| ||| | | | || || || || | |||||||| |
Sbjct 2985630 GAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGAGATCTAGGCCCGGTTT 2985571
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|||| || || ||||| || |||||||| || ||
Sbjct 2985570 ACGGCTTTCAATGGAGGCATTTTGGGGCCGAATA 2985537
>seq892
Length=2164436
Score = 138 bits (152), Expect = 1e-27
Identities = 337/513 (66%), Gaps = 37/513 (7%)
Strand=Plus/Plus
Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAA 34240
|||||| |||| ||||| || |||| ||| | | || ||||| ||| |||| || |||
Sbjct 1515797 GTGTTCCGCACGCAGGCGCGCTACAGCCTGAGAGATGAGTTTCCCCTGGTGACAACCAAA 1515856
Query 34241 CGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAAC 34300
|||| | |||||| | || |||||| |||||||||| | | | ||| |||
Sbjct 1515857 CGTGGTTTCTGGAAAAGTGTTTGGGAGGAGTTGCTGTGGTTTATCACGAAATTCACAAAC 1515916
Query 34301 ACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTT 34360
|| ||||||| || ||| ||||| || | ||||| ||||||||
Sbjct 1515917 ACTGAGGAGCTGTCTTCC---------------TGGGATGCCAATGGGTCCCGAGACTTC 1515961
Query 34361 CTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420
|||| | ||| ||| | | |||| |||| || || ||||| || ||
Sbjct 1515962 TCCGACAGCCTGGGATTCTCCACCAGGGA--AGGG-GATTTAGGCCCAGTGTA------- 1516011
Query 34421 CAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTA-TTCGGGACAGGG 34479
|||| || || || | || || | | || | || || |||||| |||||
Sbjct 1516012 ----GGAGGCATTTGGGATCCGAATACGAAGATATGGATTCAGATTAATTCGGGTCAGGG 1516067
Query 34480 AGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGAT 34539
|| ||||| ||| | ||| |||| | || |||| ||| |||||||| ||
Sbjct 1516068 AGTAGACCAACTGTAAACGGTGGCTGACATGATCAAAACCAACCTTGACGACAGAAGAAT 1516127
Query 34540 CGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACAC 34599
| | |||| || ||||| || || ||||| ||||| |||| ||||||||| |||| |
Sbjct 1516128 CATCCTGTGTGCTTGGAATCCCAAAGATCTTCCTCTCCTGGCCCTCCCCCCGGGCCATGC 1516187
Query 34600 CCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGG 34659
||| ||||| ||||| | || ||||||||||||| ||| || || | || ||
Sbjct 1516188 CCTTTGCCAGTTCTAGGA-------GGTGAGCTGTCCTGCCGGCTGTACCACTGGTCTGG 1516240
Query 34660 AGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692
| ||| ||| | || ||||| |||||||| ||
Sbjct 1516241 ACACAGGGGCCTGGGTGTGCCCTTCAACATCGC 1516273
Score = 138 bits (152), Expect = 1e-27
Identities = 337/513 (66%), Gaps = 37/513 (7%)
Strand=Plus/Minus
Query 6653 GCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGAC 6712
|| |||||||| ||||| || | ||| ||| ||| || | || || ||| ||||||||
Sbjct 1516273 GCGATGTTGAAGGGCACACCCAGGCCCCTGTGTCCAGACCAGTGGTACAGCCGGCAGGAC 1516214
Query 6713 AGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGA 6772
||||| || | ||||| ||||| |||| |||| ||||||||| |||| |||
Sbjct 1516213 AGCTCACC-------TCCTAGAACTGGCAAAGGGCATGGCCCGGGGGGAGGGCCAGGAGA 1516161
Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832
|| ||||| || || ||||| || |||| | ||| |||||||| ||| |||| ||
Sbjct 1516160 GGAAGATCTTTGGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAAGGTTGGTTTTG 1516101
Query 6833 AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAA-TAGTCCGCTTCGCT 6891
| |||| ||| | ||| ||||| ||||||| |||||| || || | || |
Sbjct 1516100 ATCATGTCAGCCACCGTTTACAGTTGGTCTACTCCCTGACCCGAATTAATCTGAATCCAT 1516041
Query 6892 CCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951
| || || | || || || |||| || || ||||| || || ||
Sbjct 1516040 ATCTTCGTATTCGGATCCCAAATGCCTCC-----------TACACTGGGCCTAAATC-CC 1515993
Query 6952 CTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCA 7011
|| |||| | | ||| ||| | |||| |||||||| ||||| | || |||||
Sbjct 1515992 CT--TCCCTGGTGGAGAATCCCAGGCTGTCGGAGAAGTCTCGGGACCCATTGGCATCCCA 1515935
Query 7012 GATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAG 7071
||| || ||||||| ||||| ||| | | | ||||||||
Sbjct 1515934 ---------------GGAAGACAGCTCCTCAGTGTTTGTGAATTTCGTGATAAACCACAG 1515890
Query 7072 CAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC 7131
|| |||||| || | |||||| | ||||||| || |||| ||| ||||| || |
Sbjct 1515889 CAACTCCTCCCAAACACTTTTCCAGAAACCACGTTTGGTTGTCACCAGGGGAAACTCATC 1515830
Query 7132 CCGAAGGTTGTATCGGGCCTGTGTGCCGAACAC 7164
| ||| |||| || ||||| |||| ||||||
Sbjct 1515829 TCTCAGGCTGTAGCGCGCCTGCGTGCGGAACAC 1515797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448079884360560
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