Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq251 410 1e-109 seq25 159 3e-34 seq892 138 1e-27 >seq251 Length=3596318 Score = 410 bits (454), Expect = 1e-109 Identities = 555/771 (72%), Gaps = 3/771 (0%) Strand=Plus/Plus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| |||||||||| ||||| || | || ||||| | ||||| || || | Sbjct 284263 TCGAAGCATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGG 284322 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| |||| |||||||| || || ||||| ||||| || || || || || || || Sbjct 284323 CTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTT 284382 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || || || || || |||||||| |||||||||| ||| || || |||||||| || Sbjct 284383 CAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGG 284442 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| || | ||||||||||| || || | ||| ||||||||||||||||| || ||| | Sbjct 284443 CACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCAC 284502 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 |||||||| ||||| |||| ||||| || ||||| ||| | || ||||| | || || Sbjct 284503 CACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGG 284562 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| || ||||| | ||| |||||||||| |||||| || | ||||| |||| Sbjct 284563 ATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCAC 284622 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | |||||| ||||| |||| | || ||||| || | || | | || || || Sbjct 284623 CTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGC 284682 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| || |||||||| || | ||| || ||||| | || ||| ||| | | | Sbjct 284683 CCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATC-TCCTTCTCTGGTG--GA 284739 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 ||| ||| | |||||| | | |||| ||||| | ||||||||||| ||||| ||| Sbjct 284740 GAATCCCAGGCTGTCCAAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTT 284799 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 ||| || |||||||| | ||| |||| ||| | | |||||||||| ||||| | || Sbjct 284800 GGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAAC 284859 Query 7087 GCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCG 7146 ||||||||| | |||||||| || || ||||| |||||||| | | ||| |||| || Sbjct 284860 ACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCG 284919 Query 7147 GGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 ||||| |||||||||| || ||||| || || || || | ||| |||||||| |||| Sbjct 284920 CGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCAGTCGTCCTTCCGGGAGCC 284979 Query 7207 CTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGG 7257 | |||||| | | ||| || |||||| |||||| ||||| Sbjct 284980 GCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTGCGG 285030 Score = 410 bits (454), Expect = 1e-109 Identities = 555/771 (72%), Gaps = 3/771 (0%) Strand=Plus/Minus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147 ||||| |||||| |||||| || ||| | | |||||| | |||| |||| Sbjct 285030 CCGCACGGGGAGCTGCAGTACTTGGGGCAGATTAAGTACATCCTCCGCTGCGGCTCCCGG 284971 Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 |||| ||| | || || || || ||||| || |||||||||| ||||| || |||| | Sbjct 284970 AAGGACGACTGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGC 284911 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | |||||||| ||||| || || |||||||| | ||||||||| || | ||| Sbjct 284910 CTCAGAGATGAATTTCCACTGCTCACAACCAAACGTGTTTTCTGGAAGGGTGTTTTGGAG 284851 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || |||||||||| | | ||| |||| ||| | |||||||| || ||| ||| ||| Sbjct 284850 GAATTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTG 284791 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 || ||||||||||| | ||||| |||| | | |||||| | ||| ||| | | | Sbjct 284790 AAAATCTGGGACGCCAATGGGTCCCGAGGCGTCTTGGACAGCCTGGGATTCTC--CACCA 284733 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||| ||| || | ||||| || ||| | || |||||||| || |||||||| || || Sbjct 284732 GAGAAGGA-GATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATAC 284674 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 | | || | || ||||| || | |||| ||||| |||||| | |||| ||| Sbjct 284673 GAAGATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGAC 284614 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || | || |||||| |||||||||| ||| | ||||| || ||||| || || | Sbjct 284613 ACAATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACAC 284554 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 ||||| || | ||| ||||| || ||||| |||| ||||| |||||||| | ||| || Sbjct 284553 CTCCCGCTCACGGCCCTCCCGCCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGT 284494 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||||||||||||||||| ||| | || || ||||||||||| | || ||||| |||||| Sbjct 284493 GAGCTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAAC 284434 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 || || || ||| |||||||||| |||||||| || || || || || || || Sbjct 284433 ATCGCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGT 284374 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || || || || || ||||| ||||| || || |||||||| |||| |||| || Sbjct 284373 GACCTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCCACTGAAA 284314 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 || ||||| | ||||| || | || ||||| |||||||||| ||||| Sbjct 284313 ATGCAGCTTCCGCGAGAACCAAGGCCTTTCCCGAAGCTCAAAATGCTTCGA 284263 >seq25 Length=14465811 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||| | |||||||| | ||| || || |||||||| ||||| || | ||| Sbjct 2982296 TGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 2982355 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 2982356 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 2982415 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| || ||||| ||||| || |||||||| Sbjct 2982416 CAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 2982456 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| || ||||| ||||| || |||||| |||| ||||| |||||||| | ||| Sbjct 2982456 GATCTCCCGCTCATGGCCCTCCCGCCCTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 2982397 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || || |||||||||||||| | || ||||| ||| Sbjct 2982396 GGTGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 2982337 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| | ||||||||| || Sbjct 2982336 AACATCGCCAGCTACTCCCTGCTCACCTGCATGATCGCACA 2982296 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||| || || ||||| |||||||| | || || || || Sbjct 2985537 TATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCT 2985596 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| |||||||| ||||| | ||||||||||| ||| Sbjct 2985597 CTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTC 2985656 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || |||||||| | ||| |||| Sbjct 2985657 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 2985690 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | ||||| | Sbjct 2985690 CCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGGGTCCC 2985631 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||||| | ||| ||| | | | || || || || | |||||||| | Sbjct 2985630 GAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGAGATCTAGGCCCGGTTT 2985571 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| || || ||||| || |||||||| || || Sbjct 2985570 ACGGCTTTCAATGGAGGCATTTTGGGGCCGAATA 2985537 >seq892 Length=2164436 Score = 138 bits (152), Expect = 1e-27 Identities = 337/513 (66%), Gaps = 37/513 (7%) Strand=Plus/Plus Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAA 34240 |||||| |||| ||||| || |||| ||| | | || ||||| ||| |||| || ||| Sbjct 1515797 GTGTTCCGCACGCAGGCGCGCTACAGCCTGAGAGATGAGTTTCCCCTGGTGACAACCAAA 1515856 Query 34241 CGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAAC 34300 |||| | |||||| | || |||||| |||||||||| | | | ||| ||| Sbjct 1515857 CGTGGTTTCTGGAAAAGTGTTTGGGAGGAGTTGCTGTGGTTTATCACGAAATTCACAAAC 1515916 Query 34301 ACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTT 34360 || ||||||| || ||| ||||| || | ||||| |||||||| Sbjct 1515917 ACTGAGGAGCTGTCTTCC---------------TGGGATGCCAATGGGTCCCGAGACTTC 1515961 Query 34361 CTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| | ||| ||| | | |||| |||| || || ||||| || || Sbjct 1515962 TCCGACAGCCTGGGATTCTCCACCAGGGA--AGGG-GATTTAGGCCCAGTGTA------- 1516011 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTA-TTCGGGACAGGG 34479 |||| || || || | || || | | || | || || |||||| ||||| Sbjct 1516012 ----GGAGGCATTTGGGATCCGAATACGAAGATATGGATTCAGATTAATTCGGGTCAGGG 1516067 Query 34480 AGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGAT 34539 || ||||| ||| | ||| |||| | || |||| ||| |||||||| || Sbjct 1516068 AGTAGACCAACTGTAAACGGTGGCTGACATGATCAAAACCAACCTTGACGACAGAAGAAT 1516127 Query 34540 CGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACAC 34599 | | |||| || ||||| || || ||||| ||||| |||| ||||||||| |||| | Sbjct 1516128 CATCCTGTGTGCTTGGAATCCCAAAGATCTTCCTCTCCTGGCCCTCCCCCCGGGCCATGC 1516187 Query 34600 CCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGG 34659 ||| ||||| ||||| | || ||||||||||||| ||| || || | || || Sbjct 1516188 CCTTTGCCAGTTCTAGGA-------GGTGAGCTGTCCTGCCGGCTGTACCACTGGTCTGG 1516240 Query 34660 AGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 | ||| ||| | || ||||| |||||||| || Sbjct 1516241 ACACAGGGGCCTGGGTGTGCCCTTCAACATCGC 1516273 Score = 138 bits (152), Expect = 1e-27 Identities = 337/513 (66%), Gaps = 37/513 (7%) Strand=Plus/Minus Query 6653 GCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGAC 6712 || |||||||| ||||| || | ||| ||| ||| || | || || ||| |||||||| Sbjct 1516273 GCGATGTTGAAGGGCACACCCAGGCCCCTGTGTCCAGACCAGTGGTACAGCCGGCAGGAC 1516214 Query 6713 AGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGA 6772 ||||| || | ||||| ||||| |||| |||| ||||||||| |||| ||| Sbjct 1516213 AGCTCACC-------TCCTAGAACTGGCAAAGGGCATGGCCCGGGGGGAGGGCCAGGAGA 1516161 Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832 || ||||| || || ||||| || |||| | ||| |||||||| ||| |||| || Sbjct 1516160 GGAAGATCTTTGGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAAGGTTGGTTTTG 1516101 Query 6833 AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAA-TAGTCCGCTTCGCT 6891 | |||| ||| | ||| ||||| ||||||| |||||| || || | || | Sbjct 1516100 ATCATGTCAGCCACCGTTTACAGTTGGTCTACTCCCTGACCCGAATTAATCTGAATCCAT 1516041 Query 6892 CCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | || || | || || || |||| || || ||||| || || || Sbjct 1516040 ATCTTCGTATTCGGATCCCAAATGCCTCC-----------TACACTGGGCCTAAATC-CC 1515993 Query 6952 CTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCA 7011 || |||| | | ||| ||| | |||| |||||||| ||||| | || ||||| Sbjct 1515992 CT--TCCCTGGTGGAGAATCCCAGGCTGTCGGAGAAGTCTCGGGACCCATTGGCATCCCA 1515935 Query 7012 GATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAG 7071 ||| || ||||||| ||||| ||| | | | |||||||| Sbjct 1515934 ---------------GGAAGACAGCTCCTCAGTGTTTGTGAATTTCGTGATAAACCACAG 1515890 Query 7072 CAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC 7131 || |||||| || | |||||| | ||||||| || |||| ||| ||||| || | Sbjct 1515889 CAACTCCTCCCAAACACTTTTCCAGAAACCACGTTTGGTTGTCACCAGGGGAAACTCATC 1515830 Query 7132 CCGAAGGTTGTATCGGGCCTGTGTGCCGAACAC 7164 | ||| |||| || ||||| |||| |||||| Sbjct 1515829 TCTCAGGCTGTAGCGCGCCTGCGTGCGGAACAC 1515797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448079884360560