Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq414 178 1e-39
seq251 131 1e-25
seq130 129 5e-25
seq224 122 7e-23
seq2246 100 2e-16
>seq414
Length=6018750
Score = 178 bits (196), Expect = 1e-39
Identities = 190/251 (76%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334
|| |||||||| | ||||| |||||||||||| | || || |||||| |||||||||
Sbjct 4933481 CCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAAAACATG 4933422
Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394
||| || || | |||| |||||||| || ||||| || || || || || || |||
Sbjct 4933421 ATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 4933362
Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454
|| || | || ||||| ||| |||| || ||||||||||| || || ||||| |||
Sbjct 4933361 ATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 4933302
Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514
|| ||||| |||||||| | || || || ||||| ||||||||||| |||||| |||
Sbjct 4933301 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 4933242
Query 1515 TGTCTAACCCT 1525
|| || |||||
Sbjct 4933241 TGCCTCACCCT 4933231
>seq251
Length=3596318
Score = 131 bits (144), Expect = 1e-25
Identities = 404/617 (65%), Gaps = 21/617 (3%)
Strand=Plus/Plus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | ||||||||||||| ||||||||| || | || ||||| || | || |||
Sbjct 284306 AGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 284365
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
| | ||||| || | || ||||| | ||| ||||||||||| || | || | ||||
Sbjct 284366 ACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAG 284425
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
||||| | || || || || ||||| ||||||||| |||| | || |||| |||||
Sbjct 284426 CTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAG 284485
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
|| ||||| ||||| | || || ||||| | | | || || || || || || ||
Sbjct 284486 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTG 284545
Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTG-CTATATGGT 118749
|| || ||||||||||| | ||||| |||||| | || |||
Sbjct 284546 AGCGGGAGGTGTTTTGGATTCCAGGC-----ACACATGATGATTCTTCTGTCATTAGGGT 284600
Query 118750 TCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGA 118809
| || || ||| | | ||||| | || || || || || || | ||| |
Sbjct 284601 TGGTTTTG-ATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 284659
Query 118810 GACT-CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCC 118868
|| | || || ||| ||||| ||||||||| ||||| ||||| | || || || ||
Sbjct 284660 GAATCCGTAT-CTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCC 284718
Query 118869 CAGATCTCC--CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCA 118926
|||||||| || | | |||| || | || | | || ||||||
Sbjct 284719 TAGATCTCCTTCTCTGGTGGAGAATC----CCAGGCTGTC-CAAGACGCCTCGGGACCCA 284773
Query 118927 TTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTT 118986
|| || | ||| || ||||| || | ||| || |||| |||||| || || |
Sbjct 284774 TTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTG 284833
Query 118987 AAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGT 119046
| |||||| || | ||||| | ||| || |||| ||||| ||| ||||| | ||||
Sbjct 284834 ATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGT 284893
Query 119047 GGAAACTGACCTCTAAG 119063
||||| | | |||| ||
Sbjct 284894 GGAAATTCATCTCTGAG 284910
>seq130
Length=18515582
Score = 129 bits (142), Expect = 5e-25
Identities = 362/549 (66%), Gaps = 25/549 (5%)
Strand=Plus/Plus
Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214
||||| || | || |||| || || || || || | ||||| ||||| || | |
Sbjct 5227941 GCTGTGTCCCAGAACATGGATATGGGCAAGAATGGGGACCTGCCCTGGCCCCCGGTCAGG 5228000
Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271
|||||||| || | || |||| |||||| | | |||| | || || ||| |
Sbjct 5228001 AATGAATTCAAGTACTTCCAAAGAATGACCACAGCCTCTTTAGCAGAAGGTAAGCAGTGT 5228060
Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCA--GGCCTTTG 2328
| || |||||||| |||||||| ||||| || ||| || | ||| | | ||||
Sbjct 5228061 TTGGTGATTATGGGTAGAAAGACCTGGTTCTCCACT---CAAGAGAAGGACTGAACTTTA 5228117
Query 2329 AACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCAC 2388
|| ||||||| | | | ||||| |||||| | || | || | |||| || |||||
Sbjct 5228118 AAGGACAGAATTAGTTTAGTTCTAAGTAGAGAACTCAGGGAACTTCCACA-GGAGCTCAT 5228176
Query 2389 TTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448
||| ||| |||||| ||| | || | || |||| ||||||||||| | |
Sbjct 5228177 TTTTTTGACAAAAGTCCGGATGATGCCTTAAAACTTATTGAGCAACCAGAATTAACAAAT 5228236
Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT-ACAAG 2507
| |||| | |||||||| | || || || ||||| || |||| ||| |||||
Sbjct 5228237 TAAGCAGATATGGTTTGGATAGTGGGAGGTAGCTCTGTTTA--AGGAAGCCATGGACAAG 5228294
Query 2508 -------ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560
||||| | ||| | |||||||| |||| ||||||| |||
Sbjct 5228295 CCAGGTCATCTTAGATTATCCTGCAGG-----ACAAGGATCATGCAGGAATTTGAGAGTG 5228349
Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620
| || || | ||||| | || | ||||| |||| ||| | |||| ||||||||
Sbjct 5228350 GCATATTTTTTCTAGAAACTGATTTGGAAAAATATAAACTTCTTCCAGAATATCCAGGTG 5228409
Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680
||||||||| || || || |||| || |||| ||||||||||| |||||||||| |
Sbjct 5228410 TTCCCTCTGATGTCCAGGAGAAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGA 5228469
Query 2681 aaaCATAAT 2689
| | ||||
Sbjct 5228470 ACAATTAAT 5228478
>seq224
Length=3327291
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 3113879 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 3113820
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 3113819 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 3113760
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 3113759 ATCGCCCTGTGGATGACTGA 3113740
>seq2246
Length=1060343
Score = 100 bits (110), Expect = 2e-16
Identities = 226/334 (68%), Gaps = 7/334 (2%)
Strand=Plus/Minus
Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226
|| ||||| || || || || | | |||| |||| || || | |||||||||||
Sbjct 253073 AACATGGGTATCGGCAAGAACAGGGACCTGCACTGGCACCCACTCAGGAATGAATTTAAG 253014
Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283
|||| ||| |||||| | | ||||| || ||||||||| | || |||||
Sbjct 253013 TATTTCAAAAGAATGACCACAGCCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATT 252954
Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACA-ACAGAATAAA 2342
|| |||||||| ||||| || ||| || | | ||||| || ||||||| ||
Sbjct 252953 GGTAGAAAGACCTGGTTCTCCATTCTAGAGAAGAATCGACCTTTAAAAGGACAGAATTAA 252894
Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402
| | |||||||||||| | | || || || |||| || | ||| ||| |||| | |||
Sbjct 252893 TTTAGTTCTCAGTAGAGAATTCAAGGAACCTCCACAAGGAGATCATTTTCTTGCCAGAAG 252834
Query 2403 TATAGATCACGCTCTGGAAATTATAATAG-GACCAGAATTAAAAGACAGGGTGGATAAGA 2461
| | ||| | || || ||| | ||| || |||||||| ||| | ||||| |
Sbjct 252833 TCTGGATGATGC-CTTAAAACTTACCTAGCAACTAGAATTAACAGATAAAGTGGACATAG 252775
Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495
|||||| | ||| || || ||||| ||| ||||
Sbjct 252774 TTTGGA-CAGTGGAGGCAGTTCTGTTTATAAGGA 252742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414312259575172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |