Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq414 178 1e-39 seq251 131 1e-25 seq130 129 5e-25 seq224 122 7e-23 seq2246 100 2e-16 >seq414 Length=6018750 Score = 178 bits (196), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || |||||||| | ||||| |||||||||||| | || || |||||| ||||||||| Sbjct 4933481 CCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAAAACATG 4933422 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| || || | |||| |||||||| || ||||| || || || || || || ||| Sbjct 4933421 ATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 4933362 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || | || ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 4933361 ATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 4933302 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || ||||| |||||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 4933301 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 4933242 Query 1515 TGTCTAACCCT 1525 || || ||||| Sbjct 4933241 TGCCTCACCCT 4933231 >seq251 Length=3596318 Score = 131 bits (144), Expect = 1e-25 Identities = 404/617 (65%), Gaps = 21/617 (3%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | ||||||||||||| ||||||||| || | || ||||| || | || ||| Sbjct 284306 AGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 284365 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | | ||||| || | || ||||| | ||| ||||||||||| || | || | |||| Sbjct 284366 ACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAG 284425 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || || ||||| ||||||||| |||| | || |||| ||||| Sbjct 284426 CTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAG 284485 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || ||||| ||||| | || || ||||| | | | || || || || || || || Sbjct 284486 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTG 284545 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTG-CTATATGGT 118749 || || ||||||||||| | ||||| |||||| | || ||| Sbjct 284546 AGCGGGAGGTGTTTTGGATTCCAGGC-----ACACATGATGATTCTTCTGTCATTAGGGT 284600 Query 118750 TCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGA 118809 | || || ||| | | ||||| | || || || || || || | ||| | Sbjct 284601 TGGTTTTG-ATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 284659 Query 118810 GACT-CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCC 118868 || | || || ||| ||||| ||||||||| ||||| ||||| | || || || || Sbjct 284660 GAATCCGTAT-CTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCC 284718 Query 118869 CAGATCTCC--CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCA 118926 |||||||| || | | |||| || | || | | || |||||| Sbjct 284719 TAGATCTCCTTCTCTGGTGGAGAATC----CCAGGCTGTC-CAAGACGCCTCGGGACCCA 284773 Query 118927 TTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTT 118986 || || | ||| || ||||| || | ||| || |||| |||||| || || | Sbjct 284774 TTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTG 284833 Query 118987 AAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGT 119046 | |||||| || | ||||| | ||| || |||| ||||| ||| ||||| | |||| Sbjct 284834 ATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGT 284893 Query 119047 GGAAACTGACCTCTAAG 119063 ||||| | | |||| || Sbjct 284894 GGAAATTCATCTCTGAG 284910 >seq130 Length=18515582 Score = 129 bits (142), Expect = 5e-25 Identities = 362/549 (66%), Gaps = 25/549 (5%) Strand=Plus/Plus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||| || || || || || | ||||| ||||| || | | Sbjct 5227941 GCTGTGTCCCAGAACATGGATATGGGCAAGAATGGGGACCTGCCCTGGCCCCCGGTCAGG 5228000 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || | || |||| |||||| | | |||| | || || ||| | Sbjct 5228001 AATGAATTCAAGTACTTCCAAAGAATGACCACAGCCTCTTTAGCAGAAGGTAAGCAGTGT 5228060 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCA--GGCCTTTG 2328 | || |||||||| |||||||| ||||| || ||| || | ||| | | |||| Sbjct 5228061 TTGGTGATTATGGGTAGAAAGACCTGGTTCTCCACT---CAAGAGAAGGACTGAACTTTA 5228117 Query 2329 AACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCAC 2388 || ||||||| | | | ||||| |||||| | || | || | |||| || ||||| Sbjct 5228118 AAGGACAGAATTAGTTTAGTTCTAAGTAGAGAACTCAGGGAACTTCCACA-GGAGCTCAT 5228176 Query 2389 TTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448 ||| ||| |||||| ||| | || | || |||| ||||||||||| | | Sbjct 5228177 TTTTTTGACAAAAGTCCGGATGATGCCTTAAAACTTATTGAGCAACCAGAATTAACAAAT 5228236 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT-ACAAG 2507 | |||| | |||||||| | || || || ||||| || |||| ||| ||||| Sbjct 5228237 TAAGCAGATATGGTTTGGATAGTGGGAGGTAGCTCTGTTTA--AGGAAGCCATGGACAAG 5228294 Query 2508 -------ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560 ||||| | ||| | |||||||| |||| ||||||| ||| Sbjct 5228295 CCAGGTCATCTTAGATTATCCTGCAGG-----ACAAGGATCATGCAGGAATTTGAGAGTG 5228349 Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620 | || || | ||||| | || | ||||| |||| ||| | |||| |||||||| Sbjct 5228350 GCATATTTTTTCTAGAAACTGATTTGGAAAAATATAAACTTCTTCCAGAATATCCAGGTG 5228409 Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680 ||||||||| || || || |||| || |||| ||||||||||| |||||||||| | Sbjct 5228410 TTCCCTCTGATGTCCAGGAGAAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGA 5228469 Query 2681 aaaCATAAT 2689 | | |||| Sbjct 5228470 ACAATTAAT 5228478 >seq224 Length=3327291 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 3113879 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 3113820 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 3113819 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 3113760 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 3113759 ATCGCCCTGTGGATGACTGA 3113740 >seq2246 Length=1060343 Score = 100 bits (110), Expect = 2e-16 Identities = 226/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || ||||| || || || || | | |||| |||| || || | ||||||||||| Sbjct 253073 AACATGGGTATCGGCAAGAACAGGGACCTGCACTGGCACCCACTCAGGAATGAATTTAAG 253014 Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 |||| ||| |||||| | | ||||| || ||||||||| | || ||||| Sbjct 253013 TATTTCAAAAGAATGACCACAGCCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATT 252954 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACA-ACAGAATAAA 2342 || |||||||| ||||| || ||| || | | ||||| || ||||||| || Sbjct 252953 GGTAGAAAGACCTGGTTCTCCATTCTAGAGAAGAATCGACCTTTAAAAGGACAGAATTAA 252894 Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402 | | |||||||||||| | | || || || |||| || | ||| ||| |||| | ||| Sbjct 252893 TTTAGTTCTCAGTAGAGAATTCAAGGAACCTCCACAAGGAGATCATTTTCTTGCCAGAAG 252834 Query 2403 TATAGATCACGCTCTGGAAATTATAATAG-GACCAGAATTAAAAGACAGGGTGGATAAGA 2461 | | ||| | || || ||| | ||| || |||||||| ||| | ||||| | Sbjct 252833 TCTGGATGATGC-CTTAAAACTTACCTAGCAACTAGAATTAACAGATAAAGTGGACATAG 252775 Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||| | ||| || || ||||| ||| |||| Sbjct 252774 TTTGGA-CAGTGGAGGCAGTTCTGTTTATAAGGA 252742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414312259575172