Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq99 187 6e-42
seq469 143 6e-29
seq119 122 2e-22
seq615 114 3e-20
seq980 105 2e-17
seq164 104 5e-17
seq89 95.1 3e-14
seq224 84.2 5e-11
>seq99
Length=2554289
Score = 187 bits (206), Expect = 6e-42
Identities = 173/218 (79%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| ||||| | ||| || | ||||||
Sbjct 1822279 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1822338
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||||||||| || || || ||||||||||| | |||||||| |||
Sbjct 1822339 TCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1822398
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| |||||||| ||||||||||| ||| || ||||| || |||||
Sbjct 1822399 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---GCTAGGCTCCACCTCCAGGGTGATG 1822455
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| ||||| | ||||| || || | |||||||||
Sbjct 1822456 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1822493
Score = 181 bits (200), Expect = 2e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| ||||| | ||| || | ||||||
Sbjct 1816886 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1816945
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||||||||| || | || ||||||||||| | || ||||| |||
Sbjct 1816946 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1817005
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||||||| | || ||||| || ||||| |||
Sbjct 1817006 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1817065
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| | ||||| || || | |||||||||
Sbjct 1817066 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1817100
Score = 181 bits (200), Expect = 2e-40
Identities = 170/215 (79%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| ||||| | ||| || | ||||||
Sbjct 1822051 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1822110
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||||||||| || || || ||||||||||| | |||||||| |||
Sbjct 1822111 TCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1822170
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| |||||||| ||||||||||| ||| || ||||| || |||||
Sbjct 1822171 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---GCTAGGCTCCACCTCCAGGGTGATG 1822227
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || ||||| || || | ||||||
Sbjct 1822228 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262
>seq469
Length=2995260
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 1051573 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1051632
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || || ||||| | | || ||||| || || | || ||||||||
Sbjct 1051633 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1051692
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| |||||||||||| | || ||||| || ||||| |||
Sbjct 1051693 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1051752
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | ||||||
Sbjct 1051753 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 1051801 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1051860
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || || ||||| | | || ||||| || || | || ||||||||
Sbjct 1051861 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1051920
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| |||||||||||| | || ||||| || ||||| |||
Sbjct 1051921 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1051980
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | ||||||
Sbjct 1051981 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 1052029 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1052088
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || || ||||| | | || ||||| || || | || ||||||||
Sbjct 1052089 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1052148
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| |||||||||||| | || ||||| || ||||| |||
Sbjct 1052149 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1052208
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | ||||||
Sbjct 1052209 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 1052390 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1052449
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || || ||||| | | || ||||| || || | || ||||||||
Sbjct 1052450 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1052509
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| |||||||||||| | || ||||| || ||||| |||
Sbjct 1052510 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1052569
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | ||||||
Sbjct 1052570 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 1052618 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1052677
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || || ||||| | | || ||||| || || | || ||||||||
Sbjct 1052678 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1052737
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| |||||||||||| | || ||||| || ||||| |||
Sbjct 1052738 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1052797
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | ||||||
Sbjct 1052798 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| |||||||| || || |||||||| || || | ||||| | ||||||
Sbjct 1051345 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1051404
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || || ||||| | | || ||||| || || | || ||||||||
Sbjct 1051405 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1051464
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| |||||||||||| | || ||||| || ||||| |||
Sbjct 1051465 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1051524
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | ||||||
Sbjct 1051525 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556
>seq119
Length=227305
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||||||||| || || || || || | | || | |||||
Sbjct 86648 AGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCC 86707
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| |||| || || || || | || |||||||| || | || ||||||||
Sbjct 86708 TCCAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 86767
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| || || || |||||||| | |||||||| || ||||| |||
Sbjct 86768 TGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 86827
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||| | || ||||| ||||| ||||||||
Sbjct 86828 TTGCCCATCAGGGTCTTCACAAAGACCTGCAT 86859
>seq615
Length=2269971
Score = 114 bits (126), Expect = 3e-20
Identities = 150/207 (72%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGA---TGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967
||| || |||||||| || || | | || || || | || || | ||||| || ||
Sbjct 1647534 GTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCTGACAGAGTGCAGCCATCCTCTAG 1647475
Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027
||| ||||| | || || || || || || ||||| || | || ||||||||||||||
Sbjct 1647474 CTGTTTGCCCACAAAAATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCCTGGAT 1647415
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087
|| ||| || || || |||||||| | ||||||||||| ||||| ||||| ||
Sbjct 1647414 TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 1647355
Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || ||||| ||||| | ||||||
Sbjct 1647354 CGTCAGGGTCTTCACAAAGATCTGCAT 1647328
>seq980
Length=957497
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||| |||| | ||| |||||||| |||||||| ||||| | ||| || | |||||||
Sbjct 782137 AGGATCAGGTACAAAGTTGACTCTTTCTGGATGTTTTAATCAGAAAGAGTACATCCATCT 782078
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| |||||||| ||||| || || |||||||| | | ||||||||| |
Sbjct 782077 TCCAGCTGTTTGCCTGCAAAGATGAGTGTCTGCTGGTCAGGGAGGATGCCTTCCTTGGTC 782018
Query 211023 TGGATCTT 211030
||||||||
Sbjct 782017 TGGATCTT 782010
>seq164
Length=6526486
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
||||||||||| || | | ||||| | || || | ||||| |||||||| || ||
Sbjct 3962303 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 3962362
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
| ||| || || | || |||||||| || | || |||||||| | ||| | |||
Sbjct 3962363 GTGAAAATGAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 3962422
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
|| || | ||||||||| | ||||||||||| ||||| ||||| || || || |||
Sbjct 3962423 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 3962482
Query 211098 TTTACAAACACCTGCAT 211114
|| ||||| | ||| ||
Sbjct 3962483 TTCACAAAGATCTGTAT 3962499
>seq89
Length=3644534
Score = 95.1 bits (104), Expect = 3e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979
|| ||| || || || || || || | |||| | || || |||||||| | ||| ||
Sbjct 1710819 GGCCTCCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGC 1710760
Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039
||| | || || || |||||||| || | || |||||||| | ||| || | | ||
Sbjct 1710759 GAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGAC 1710700
Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099
|| || |||||||| || ||||||||||| |||| ||||| ||| | || ||||
Sbjct 1710699 ATTCTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTT 1710640
Query 211100 TACAAACACCTG 211111
||||| |||||
Sbjct 1710639 CACAAAGACCTG 1710628
>seq224
Length=3327291
Score = 84.2 bits (92), Expect = 5e-11
Identities = 113/155 (73%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||| || |||||||| |||| | ||| | ||||||
Sbjct 899349 AGGACCAGGTGCAGGGTTGACT--TTCTGGATGTTGTAATTAGAAAGTATGAGGCCATCT 899292
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAG-GAGGAACTCCTTCCTTGTC 211021
|| ||||| ||| |||| ||||| || | || ||| | | || | || ||||| ||
Sbjct 899291 TCTAGCTGTTTGACTGCAAAGATGAGCCTCTGCTGGCTGGTGGGGGATGCCGTCCTTATC 899232
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAG 211056
|||||||||| ||||| || |||||| ||||||
Sbjct 899231 CTGGATCTTTGCCTTCACATTCTCGATGATGTCAG 899197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158668237693145
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