Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq99 147 5e-30
seq469 136 9e-27
seq32573 105 2e-17
seq119 84.2 5e-11
seq44 84.2 5e-11
>seq99
Length=2554289
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || || || |||| |||||||| | | ||| | |||||
Sbjct 1822278 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1822337
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || || || ||||| || || || |||||||| ||
Sbjct 1822338 TTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1822397
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||||||||||| | ||||| || | ||||| ||
Sbjct 1822398 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 1822457
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||||||||| || || | ||| | ||||||||
Sbjct 1822458 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1822493
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || || || |||| |||||||| | | ||| | ||||||
Sbjct 1816886 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1816945
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || | || ||||| || || || || ||||| ||
Sbjct 1816946 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1817005
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||||||||| || ||||| || | ||||| |||
Sbjct 1817006 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1817065
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||||| || || | ||| | ||||||||
Sbjct 1817066 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1817100
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || || || |||| |||||||| | | ||| | |||||
Sbjct 1822050 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1822109
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || |||||||| || || || ||||| || || || |||||||| ||
Sbjct 1822110 TTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1822169
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| ||||||||||| | ||||| || | ||||| ||
Sbjct 1822170 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 1822229
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| || || | ||| | |||||
Sbjct 1822230 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262
>seq469
Length=2995260
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| | ||| ||||||||||| || |||| ||||| || | || || | ||||||
Sbjct 1051344 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051403
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1051404 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051463
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1051464 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051523
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||| || || | ||| | |||||
Sbjct 1051524 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||
Sbjct 1051572 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051631
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1051632 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051691
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1051692 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051751
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||| || || | ||| | |||||
Sbjct 1051752 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||
Sbjct 1051800 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051859
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1051860 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051919
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1051920 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051979
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||| || || | ||| | |||||
Sbjct 1051980 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||
Sbjct 1052028 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052087
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1052088 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052147
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1052148 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052207
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||| || || | ||| | |||||
Sbjct 1052208 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||
Sbjct 1052389 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052448
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1052449 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052508
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1052509 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052568
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||| || || | ||| | |||||
Sbjct 1052569 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||
Sbjct 1052617 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052676
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1052677 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052736
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1052737 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052796
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||| || || | ||| | |||||
Sbjct 1052797 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829
>seq32573
Length=16643
Score = 105 bits (116), Expect = 2e-17
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| | || || || || | ||||| ||||| || || |||||||||||| | |||||
Sbjct 5485 CCAAATCTATAATGTAGTTGTAACGGCTCATGCTTTCGTCATGATTTTCTTTATGGTTAT 5544
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
||| | ||||| || || ||||| |||||| | || || |||| ||||| || || ||
Sbjct 5545 GCCAATCATGATTGGGGGCTTCGGGAATTGACTGGTCCCCCTAATAATTGGAGCCCCGGA 5604
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
||||| || || | | || ||||| || || || || ||||| || || || || ||
Sbjct 5605 CATGGCGTTCCCCCGCATGAATAATATGAGCTTCTGGTTGCTACCTCCCTCATTCTTGCT 5664
Query 7731 A 7731
|
Sbjct 5665 A 5665
>seq119
Length=227305
Score = 84.2 bits (92), Expect = 5e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| ||||| || | |||||| || | ||| | |||||
Sbjct 86648 AGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCC 86707
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || | || || || || | || ||||| || || || || |||||||||
Sbjct 86708 TCCAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 86767
Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||| ||| || || ||| || ||||||| || || || || | ||||| ||
Sbjct 86768 TGGAT-TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 86826
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||| ||| || || | || || |||||
Sbjct 86827 CTTGCCCATCAGGGTCTTCACAAAGACCTGCAT 86859
>seq44
Length=1844974
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076
||||||| ||||| || || ||| | || || ||| ||||| ||||| |||||||| |
Sbjct 43725 CACTTCAGTACCTGGCGCCCTACTCCGGGTGCTCTATGGGAGAGTATTTCAGAGATAACG 43784
Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122
| ||||||||||| |||||||| || || ||| ||||| ||||
Sbjct 43785 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 43830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192033507165662
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