Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq99 147 5e-30 seq469 136 9e-27 seq32573 105 2e-17 seq119 84.2 5e-11 seq44 84.2 5e-11 >seq99 Length=2554289 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || || || |||| |||||||| | | ||| | ||||| Sbjct 1822278 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1822337 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || || || ||||| || || || |||||||| || Sbjct 1822338 TTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1822397 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| | ||||| || | ||||| || Sbjct 1822398 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 1822457 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||| || || | ||| | |||||||| Sbjct 1822458 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1822493 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| |||||||| | | ||| | |||||| Sbjct 1816886 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1816945 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || | || ||||| || || || || ||||| || Sbjct 1816946 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1817005 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 1817006 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1817065 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| || || | ||| | |||||||| Sbjct 1817066 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1817100 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || || || |||| |||||||| | | ||| | ||||| Sbjct 1822050 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1822109 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || || || ||||| || || || |||||||| || Sbjct 1822110 TTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1822169 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| | ||||| || | ||||| || Sbjct 1822170 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 1822229 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 1822230 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262 >seq469 Length=2995260 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| ||||||||||| || |||| ||||| || | || || | |||||| Sbjct 1051344 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051403 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1051404 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051463 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1051464 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051523 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || || | ||| | ||||| Sbjct 1051524 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 1051572 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051631 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1051632 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051691 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1051692 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051751 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || || | ||| | ||||| Sbjct 1051752 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051784 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 1051800 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051859 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1051860 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051919 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1051920 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051979 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || || | ||| | ||||| Sbjct 1051980 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052012 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 1052028 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052087 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1052088 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052147 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1052148 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052207 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || || | ||| | ||||| Sbjct 1052208 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052240 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 1052389 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052448 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1052449 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052508 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1052509 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052568 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || || | ||| | ||||| Sbjct 1052569 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052601 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 1052617 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1052676 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1052677 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1052736 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1052737 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1052796 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || || | ||| | ||||| Sbjct 1052797 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1052829 >seq32573 Length=16643 Score = 105 bits (116), Expect = 2e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || || || || | ||||| ||||| || || |||||||||||| | ||||| Sbjct 5485 CCAAATCTATAATGTAGTTGTAACGGCTCATGCTTTCGTCATGATTTTCTTTATGGTTAT 5544 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | ||||| || || ||||| |||||| | || || |||| ||||| || || || Sbjct 5545 GCCAATCATGATTGGGGGCTTCGGGAATTGACTGGTCCCCCTAATAATTGGAGCCCCGGA 5604 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||||| || || | | || ||||| || || || || ||||| || || || || || Sbjct 5605 CATGGCGTTCCCCCGCATGAATAATATGAGCTTCTGGTTGCTACCTCCCTCATTCTTGCT 5664 Query 7731 A 7731 | Sbjct 5665 A 5665 >seq119 Length=227305 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| || | |||||| || | ||| | ||||| Sbjct 86648 AGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCC 86707 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || | || || || || | || ||||| || || || || ||||||||| Sbjct 86708 TCCAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 86767 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || ||||||| || || || || | ||||| || Sbjct 86768 TGGAT-TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 86826 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||| ||| || || | || || ||||| Sbjct 86827 CTTGCCCATCAGGGTCTTCACAAAGACCTGCAT 86859 >seq44 Length=1844974 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || || ||| ||||| ||||| |||||||| | Sbjct 43725 CACTTCAGTACCTGGCGCCCTACTCCGGGTGCTCTATGGGAGAGTATTTCAGAGATAACG 43784 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| || || ||| ||||| |||| Sbjct 43785 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 43830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192033507165662