Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq251 313 2e-80
seq25 152 4e-32
seq91 87.8 1e-12
seq2246 86.0 5e-12
>seq251
Length=3596318
Score = 313 bits (346), Expect = 2e-80
Identities = 478/687 (70%), Gaps = 4/687 (1%)
Strand=Plus/Plus
Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670
|||||||| || || || | | ||||| || |||| || || ||| | |||||
Sbjct 284282 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 284340
Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730
| ||| |||||||||| ||||| |||| || || || | || || |||| ||| ||
Sbjct 284341 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 284400
Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790
|||||||| ||||| |||||||||||||||||||| |||||||| || || ||||||||
Sbjct 284401 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 284460
Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850
||||||| || || |||||||| || ||||| |||| |||||| ||||| || |
Sbjct 284461 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 284520
Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910
||||||||| || || |||||| |||| | || ||| || ||||||||||||| |||
Sbjct 284521 GGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 284580
Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970
||| | ||||| | |||||| | |||| ||| | || ||||| || || ||
Sbjct 284581 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 284640
Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030
|| | || || || |||| | ||||||||||||||
Sbjct 284641 TCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTG 284700
Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090
|| | ||| || || || || |||| |||| ||| ||| ||| |||||||
Sbjct 284701 AAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCAA 284757
Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150
| | ||| ||| || |||||||||||||| || || ||||| || ||||| || |
Sbjct 284758 GACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 284817
Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210
||||||||| || ||| |||||||||| ||||||| || ||||||| || || |
Sbjct 284818 GTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACG 284877
Query 30211 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACAT 30270
||||| ||||| || ||||| | | |||||| ||| | |||||| || ||||
Sbjct 284878 TTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACAC 284937
Query 30271 GGACAAGACTCCCGTGCCTGTCCTGTC 30297
|||| | || ||||| || | |||
Sbjct 284938 CGACAGGGTGCCGGTGCCCGTGCAGTC 284964
>seq25
Length=14465811
Score = 152 bits (168), Expect = 4e-32
Identities = 132/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||| | ||||| || ||||||||||||||||| ||||||
Sbjct 2982284 AGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 2982343
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || |||| |||||| |||||||| || ||||| |||| |
Sbjct 2982344 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 2982403
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
||||| ||||| || | ||| ||||| || || |||||||||||
Sbjct 2982404 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 2982447
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||| || || ||||| ||||| || || ||||| ||||| ||| |||
Sbjct 2985549 AAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCTCTGGTGGAGAAT 2985608
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||| ||||||| ||| || |||||||||||||| || || |||||
Sbjct 2985609 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAA 2985668
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| ||||| || | ||||||||| ||
Sbjct 2985669 GACAGCTCCTTAGCGTTTGTGGATCC 2985694
>seq91
Length=16929213
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| || | || | ||||| | | ||||| |||||| || ||
Sbjct 15942614 TTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 15942673
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| |||||||||||||| ||||||| || |||||||||
Sbjct 15942674 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGCTTACCT 15942721
>seq2246
Length=1060343
Score = 86.0 bits (94), Expect = 5e-12
Identities = 162/236 (69%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTC-TC 114320
|||| |||| || || || || | || || ||||| |||| || | ||||| |
Sbjct 252848 ATGATCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTT 252907
Query 114321 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 114380
| | ||||| |||||| || | ||||||||||| ||||||||||| || ||||||| |
Sbjct 252908 TTAAAGGTCGATTCTTCTCTAGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAAT 252967
Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 114440
|||| |||||| | ||||| | | ||||| | || | ||||| || || |
Sbjct 252968 TCTGTTTACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCC 253027
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 114495
||| || ||||| |||| || | ||| || ||||| |||||| |||||
Sbjct 253028 TGAGT------GGGTGCCAGTGCAGGTCCCTGTTCTTGCCGATACCCATGTTCTGG 253077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406001959936678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |