Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2401 111 1e-19 seq317 107 2e-18 seq279 107 2e-18 seq551 89.7 4e-13 >seq2401 Length=178734 Score = 111 bits (122), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATT-CAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || || || |||||||| ||| || || || | ||||| |||| |||||| || |||| Sbjct 96442 GCCCTTGTGAAAACCGACATTTCAGATAGCTCTTCCTTCTGGGTACTACGGGAGAGTAGC 96501 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | |||||||| || || || || || ||||| | |||| Sbjct 96502 TCCACGTTCAGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 96561 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| |||| |||||| ||||| |||| | ||||||||||| |||||| | | || Sbjct 96562 AGATTATACAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 96620 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | | || || || ||||| ||| Sbjct 96621 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAA 96658 >seq317 Length=3209840 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | || ||||| | |||| ||| || Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 2108641 Query 4692 AC 4693 || Sbjct 2108640 AC 2108639 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 2106645 TCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 2106586 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 2106585 ATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 2106542 >seq279 Length=9007507 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || ||||| || ||||| || | || ||||| | ||||||||| | Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658 Query 4690 CTAC 4693 | || Sbjct 4426657 CCAC 4426654 >seq551 Length=2531292 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || || ||| ||||| || |||| ||||| |||||| ||| || |||| Sbjct 2043386 GCCCTTGTGAAGACCAGCATTCAGATAGCTTTCCCTTCTGGGTGCCTTGGAGGAGCAGCT 2043327 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | || || |||| | |||||||| || || || || || ||||| |||||| | Sbjct 2043326 CCATGTTCAGGCCTGGCTGCAAAACACTTCATGGATGTAGGAGCTGGTGTCATAGATGAA 2043267 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || || |||||||| ||||| ||| | ||||||||||| |||||| Sbjct 2043266 GATTACAGAGGAAATGTTGGTGTTGCACTATTTAATTTTGGCAAAGAAAA 2043217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426880068381809