Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq2401 111 1e-19
seq317 107 2e-18
seq279 107 2e-18
seq551 89.7 4e-13
>seq2401
Length=178734
Score = 111 bits (122), Expect = 1e-19
Identities = 159/220 (72%), Gaps = 7/220 (3%)
Strand=Plus/Plus
Query 31766 GCGCTAGTTAAAACCGATATT-CAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
|| || || |||||||| ||| || || || | ||||| |||| |||||| || ||||
Sbjct 96442 GCCCTTGTGAAAACCGACATTTCAGATAGCTCTTCCTTCTGGGTACTACGGGAGAGTAGC 96501
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | || || ||||| | |||||||| || || || || || ||||| | ||||
Sbjct 96502 TCCACGTTCAGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 96561
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| |||| |||||| ||||| |||| | ||||||||||| |||||| | | ||
Sbjct 96562 AGATTATACAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 96620
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
| |||||||| ||| | | || || || ||||| |||
Sbjct 96621 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAA 96658
>seq317
Length=3209840
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|||||||||||||| ||||| || ||||| || | || ||||| | |||| ||| ||
Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| |||
Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 2108641
Query 4692 AC 4693
||
Sbjct 2108640 AC 2108639
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| || ||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 2106645 TCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 2106586
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | |||||||| | ||||||||
Sbjct 2106585 ATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 2106542
>seq279
Length=9007507
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||| |||||||| || ||||| || ||||| || | || ||||| | ||||||||| |
Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| |
Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658
Query 4690 CTAC 4693
| ||
Sbjct 4426657 CCAC 4426654
>seq551
Length=2531292
Score = 89.7 bits (98), Expect = 4e-13
Identities = 122/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825
|| || || || ||| ||||| || |||| ||||| |||||| ||| || ||||
Sbjct 2043386 GCCCTTGTGAAGACCAGCATTCAGATAGCTTTCCCTTCTGGGTGCCTTGGAGGAGCAGCT 2043327
Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885
|| | || || |||| | |||||||| || || || || || ||||| |||||| |
Sbjct 2043326 CCATGTTCAGGCCTGGCTGCAAAACACTTCATGGATGTAGGAGCTGGTGTCATAGATGAA 2043267
Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
|| || |||||||| ||||| ||| | ||||||||||| ||||||
Sbjct 2043266 GATTACAGAGGAAATGTTGGTGTTGCACTATTTAATTTTGGCAAAGAAAA 2043217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426880068381809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |