Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq251 313 2e-80 seq25 138 8e-28 >seq251 Length=3596318 Score = 313 bits (346), Expect = 2e-80 Identities = 485/689 (70%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| || || || | | ||||| | ||||| || || ||||| |||||| Sbjct 284282 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 284340 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | ||| || ||||||| ||||| |||| || || || | || || |||| ||| || Sbjct 284341 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 284400 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||| ||||| |||||||||||||||||||| ||||| || || || |||||||| Sbjct 284401 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 284460 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 || |||| || || ||||| || || ||||| || | ||||| ||||| || | Sbjct 284461 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 284520 Query 27345 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 27404 ||| ||||| || || || ||| |||| | || ||| || |||||||| |||| ||| Sbjct 284521 GGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 284580 Query 27405 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 27464 ||| | ||||| | |||||| | |||| ||| | || ||||| || || || Sbjct 284581 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 284640 Query 27465 CCCCATCCCCGAGTAGTCT--ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 || | || || || ||| | || || | | ||| || || || ||||||||||| Sbjct 284641 TCCTTTGCCTGAATAATCTGAATCCGTATCTTC--GTATTCGGCCCCAAAATGCCTCCAC 284698 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 27582 || || | ||| || || || || |||| |||| ||| ||| ||| ||||| Sbjct 284699 TGAAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCC 284755 Query 27583 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 27642 || | | ||| ||| || |||||||||||||| || || ||||| || ||||| || Sbjct 284756 AAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 284815 Query 27643 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 27702 | ||||||||| || ||| |||||||||| ||||||| || ||||||| || || Sbjct 284816 GCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACA 284875 Query 27703 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAAC 27762 | ||||| ||||| || ||||| | | |||||| ||| | ||||| || ||| Sbjct 284876 CGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAAC 284935 Query 27763 ACGGACAAGACTCCCGTGCCCGTCCTGTC 27791 || |||| | || |||||||| | ||| Sbjct 284936 ACCGACAGGGTGCCGGTGCCCGTGCAGTC 284964 >seq25 Length=14465811 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||| | ||||| || ||||||||||||||||| ||||| Sbjct 2982284 AGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 2982343 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||||| |||||| ||||| || || ||||| || | Sbjct 2982344 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 2982403 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 2982404 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 2982447 Score = 118 bits (130), Expect = 8e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || |||||||||||||| || ||||| ||||| || || || Sbjct 2985527 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 2985586 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||| ||||| ||| ||| ||| ||||||| ||||||| ||| || |||||||| Sbjct 2985587 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 2985646 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 2985647 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 2985694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369360511761563