Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq48 127 3e-24
seq317 111 2e-19
seq2401 96.9 5e-15
seq279 93.3 6e-14
>seq48
Length=13907917
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | ||
Sbjct 107469 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107528
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||||||| |||||||| |||||||| ||||| || || | | ||||||
Sbjct 107529 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107588
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 107589 TTTCTTATACCAT 107601
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||
Sbjct 123060 AGTGCCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 123119
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||| ||||||||||| | || || || || ||||| || || | ||| | ||||||
Sbjct 123120 GTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 123179
Query 78518 CATATGCTGAGGTCTTTCAACC 78539
||||||||| ||||| ||| ||
Sbjct 123180 CATATGCTGTGGTCTCTCAGCC 123201
Score = 89.7 bits (98), Expect = 7e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | ||
Sbjct 115798 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 115857
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|| || |||||||| ||||| || | ||| |||||||| | || || ||||||| ||
Sbjct 115858 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 115917
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 115918 TCCAGGTAAATAGCAAATGCACCAGGTCG 115946
>seq317
Length=3209840
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || |||
Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||||| || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 2108642
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/138 (76%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| |
Sbjct 2110153 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 2110094
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| ||
Sbjct 2110093 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2110034
Query 47912 CATAAAATCAAATGGATT 47929
|||||| |||||||||||
Sbjct 2110033 CATAAAGTCAAATGGATT 2110016
>seq2401
Length=178734
Score = 96.9 bits (106), Expect = 5e-15
Identities = 244/363 (67%), Gaps = 20/363 (6%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||||| | |||||||| |||||| ||| ||||||
Sbjct 96739 TCCAGTGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAACACTTGAACTTCC 96682
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| || || || | | || ||| | | || || || || |||| ||||||| | ||
Sbjct 96681 TCCATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 96622
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | || | || |||| | ||| ||||||||
Sbjct 96621 ACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGTATAATCT 96562
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||| | || || |||| ||||| || |||| || || || || | |||
Sbjct 96561 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGAACGTGGA 96502
Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCG-AATATCTGTTTTAATCA 46165
|||| ||| || || ||||| || | || ||| | ||| || ||||| | ||
Sbjct 96501 GCTACTCTCCCGTAGTACCCAGAA----GGAAGAGCTATCTGAAATGTCGGTTTTCA-CA 96447
Query 46166 ATCTCCTTTCTCCAGGAGGGAT--AGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223
| || ||||||| | | ||| || || |||| |||||||| | ||||| || ||
Sbjct 96446 AGGGCC-TTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCCGC 96388
Query 46224 TGC 46226
||
Sbjct 96387 GGC 96385
>seq279
Length=9007507
Score = 93.3 bits (102), Expect = 6e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||||||||| || || | ||| || ||||| ||||| || ||||| || || | || |
Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
| ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| |
Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658
Query 48283 C 48283
|
Sbjct 4426657 C 4426657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694385956914720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |