Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq48 127 3e-24 seq317 111 2e-19 seq2401 96.9 5e-15 seq279 93.3 6e-14 >seq48 Length=13907917 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | || Sbjct 107469 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107528 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||||||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 107529 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107588 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 107589 TTTCTTATACCAT 107601 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || || Sbjct 123060 AGTGCCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 123119 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| ||||||||||| | || || || || ||||| || || | ||| | |||||| Sbjct 123120 GTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 123179 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 ||||||||| ||||| ||| || Sbjct 123180 CATATGCTGTGGTCTCTCAGCC 123201 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 115798 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 115857 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 115858 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 115917 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 115918 TCCAGGTAAATAGCAAATGCACCAGGTCG 115946 >seq317 Length=3209840 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 2108642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 2110153 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 2110094 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 2110093 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2110034 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 2110033 CATAAAGTCAAATGGATT 2110016 >seq2401 Length=178734 Score = 96.9 bits (106), Expect = 5e-15 Identities = 244/363 (67%), Gaps = 20/363 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||||| | |||||||| |||||| ||| |||||| Sbjct 96739 TCCAGTGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAACACTTGAACTTCC 96682 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | || || || | | || ||| | | || || || || |||| ||||||| | || Sbjct 96681 TCCATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 96622 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | || | || |||| | ||| |||||||| Sbjct 96621 ACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGTATAATCT 96562 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||| | || || |||| ||||| || |||| || || || || | ||| Sbjct 96561 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGAACGTGGA 96502 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCG-AATATCTGTTTTAATCA 46165 |||| ||| || || ||||| || | || ||| | ||| || ||||| | || Sbjct 96501 GCTACTCTCCCGTAGTACCCAGAA----GGAAGAGCTATCTGAAATGTCGGTTTTCA-CA 96447 Query 46166 ATCTCCTTTCTCCAGGAGGGAT--AGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | || ||||||| | | ||| || || |||| |||||||| | ||||| || || Sbjct 96446 AGGGCC-TTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCCGC 96388 Query 46224 TGC 46226 || Sbjct 96387 GGC 96385 >seq279 Length=9007507 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| | Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658 Query 48283 C 48283 | Sbjct 4426657 C 4426657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694385956914720