Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq801 156 6e-33
seq63 87.8 3e-12
>seq801
Length=8673260
Score = 156 bits (172), Expect = 6e-33
Identities = 169/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| |||| ||| |||||||||||| || || || || ||||| |||||
Sbjct 3377684 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 3377743
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
|| |||||||||| |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 3377744 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 3377803
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
||| || || ||||| | ||| || ||| || || | ||||| |||||||| |
Sbjct 3377804 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 3377863
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
||||| |||||||| | || ||||||| || || ||||
Sbjct 3377864 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 3377907
Score = 120 bits (132), Expect = 4e-22
Identities = 209/304 (69%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | || || ||||| || || || || | |||| ||||||||||| |
Sbjct 3376199 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 3376258
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||||||||||||||||
Sbjct 3376259 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGCTTCCAGTACT 3376318
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || || || || |||| || ||||| | |||||| || || || || |
Sbjct 3376319 CAGGAGAACATATAGGATTACCCATCAGTCCTTTCAAGGAGAATGGTGCTCCAGCTTCTA 3376378
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| |||| || |||||||| | ||||| |||||||| |||| | | | ||||
Sbjct 3376379 CCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACA 3376438
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
| |||| | || | ||| || || || || | || ||||| || ||||| ||||
Sbjct 3376439 GTTCCATGACATCAATGTCACCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 3376498
Query 8583 CTGT 8586
||||
Sbjct 3376499 CTGT 3376502
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 3378781 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 3378840
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || || |||||||| ||
Sbjct 3378841 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 3378900
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | ||||| |||||||||||| | | | ||| || ||||
Sbjct 3378901 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 3378960
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | | |||| || |||||
Sbjct 3378961 TTTCCTCCCTGAAAAATGAGAA 3378982
Score = 98.7 bits (108), Expect = 1e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || |||| || || ||||| ||| ||||
Sbjct 3379306 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 3379365
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||||||||| || || |||||||||||| || | |||| || ||||| |
Sbjct 3379366 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 3379425
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| ||||||||||||| || ||||| ||||
Sbjct 3379426 GGTGGGCTGTCAATCAGATGTGATCTTGCTGA 3379457
>seq63
Length=4120113
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704
|| || ||||| || |||| | | || |||||| | || || || |||| | |||
Sbjct 57428 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 57485
Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 57486 TGAAGAACTGGTGAGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 57545
Query 9765 GATCGGGAGTGAAGGTCCTCC 9785
| || || |||| ||||||
Sbjct 57546 GGTCAGGTATGAACTTCCTCC 57566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716584914649920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |