Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq99 159 8e-34
seq469 141 2e-28
seq164 105 2e-17
seq615 100 7e-16
>seq99
Length=2554289
Score = 159 bits (176), Expect = 8e-34
Identities = 170/222 (77%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || |||||||| || | || || || || |||||||| ||||
Sbjct 1822498 AGGTCAAAATGC---AGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGG 1822442
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || || |||||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 1822441 TGGA--GCCTAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 1822384
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|||||| |||||||| || || |||||||| || || ||||| |||||||| | |||||
Sbjct 1822383 CCCTCCTGACCAGCAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 1822324
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| |||| || || || || ||||| || ||
Sbjct 1822323 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 1822282
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || ||
Sbjct 1822259 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCTAGCG 1822202
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||||||||||| || ||||| ||||| || ||||| |||||||| |||||||
Sbjct 1822201 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAGC 1822142
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || |||||||| || || ||||| |||||||| | |||||| | ||||| |||
Sbjct 1822141 AGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1822082
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| || ||
Sbjct 1822081 TCCAGAAGGAGTCGACCCTGCACCTGGT 1822054
Score = 150 bits (166), Expect = 4e-31
Identities = 168/222 (76%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || |||||||| || | || || || || |||||||| ||||
Sbjct 1817105 AGGTCAAAATGC---AGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGG 1817049
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| ||||||||||||| || || ||||| ||||| || || || ||
Sbjct 1817048 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 1816991
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|||||| |||||||| | || |||||||| || || ||||| |||||||| | |||||
Sbjct 1816990 CCCTCCTGACCAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 1816931
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| |||| || || || || ||||| || ||
Sbjct 1816930 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 1816889
>seq469
Length=2995260
Score = 141 bits (156), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1051781 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1051724
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1051723 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 1051664
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1051663 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1051604
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 1051603 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 1051563
Score = 141 bits (156), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1052009 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1051952
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1051951 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 1051892
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1051891 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1051832
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 1051831 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 1051791
Score = 141 bits (156), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1052237 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1052180
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1052179 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 1052120
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1052119 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1052060
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 1052059 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 1052019
Score = 141 bits (156), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1052598 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1052541
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1052540 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 1052481
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1052480 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1052421
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 1052420 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 1052380
Score = 141 bits (156), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1052826 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1052769
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1052768 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 1052709
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1052708 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1052649
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 1052648 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 1052608
Score = 140 bits (154), Expect = 8e-28
Identities = 157/207 (76%), Gaps = 5/207 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1051553 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1051496
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1051495 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 1051436
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1051435 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1051376
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| || ||||| || ||||| ||||
Sbjct 1051375 TCCAGAAGGAATCCACTCTGCA-CTTG 1051350
>seq164
Length=6526486
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || ||||| || || |||||||||||||| || | | |||
Sbjct 3962496 CAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACTGAC 3962437
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| |||| |||||| | || | ||||| || || ||||| || ||||||||
Sbjct 3962436 ACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAGCAG 3962377
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || || ||| | || |||||||| || ||||| | ||||| | ||||| | ||
Sbjct 3962376 CATCTCATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGATGTT 3962317
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| ||||| || || |||||
Sbjct 3962316 CAGAAAGAGTCCACCTTGCAT 3962296
>seq615
Length=2269971
Score = 100 bits (110), Expect = 7e-16
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 1647331 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 1647388
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||| ||||| |||||| || || |||||||| || || ||||| || || ||||
Sbjct 1647389 ACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCAGC 1647448
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
| || || || || | || |||||||| || ||||| | |||||
Sbjct 1647449 AGCGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCT 1647494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203228832940162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |