Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq469 138 1e-27 seq99 129 5e-25 seq615 95.1 1e-14 seq89 82.4 7e-11 >seq469 Length=2995260 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1051567 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1051626 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 1051627 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1051686 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 1051687 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1051746 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||||| ||||| ||||| ||||||||| Sbjct 1051747 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1051785 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1051795 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1051854 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 1051855 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1051914 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 1051915 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1051974 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||||| ||||| ||||| ||||||||| Sbjct 1051975 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052013 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1052023 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1052082 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 1052083 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1052142 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 1052143 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1052202 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||||| ||||| ||||| ||||||||| Sbjct 1052203 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052241 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1052384 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1052443 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 1052444 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1052503 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 1052504 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1052563 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||||| ||||| ||||| ||||||||| Sbjct 1052564 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052602 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1052612 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1052671 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 1052672 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 1052731 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 1052732 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1052791 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||||| ||||| ||||| ||||||||| Sbjct 1052792 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1052830 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | || ||| | |||| ||||| ||| |||||||| ||||| ||||| || Sbjct 1051330 CCTCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 1051389 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || || ||||| || ||||| || |||| | ||| ||||| | ||| Sbjct 1051390 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1051449 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | | ||||| || | ||||||| Sbjct 1051450 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1051509 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || |||||||||| ||||| ||||| ||||||||| Sbjct 1051510 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 1051557 >seq99 Length=2554289 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||||||| ||||| || || || || ||||| Sbjct 1822273 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1822332 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| || || ||||| ||||| | || | || ||| Sbjct 1822333 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCC 1822392 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 1822393 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTG 1822452 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||||| ||||| ||||| |||||||| || Sbjct 1822453 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1822493 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||||||| ||||| || || || || ||||| Sbjct 1822045 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1822104 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| || || ||||| ||||| | || | || ||| Sbjct 1822105 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATGCCTTCC 1822164 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 1822165 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTG 1822224 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 1822225 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262 Score = 125 bits (138), Expect = 7e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||||||||| ||||| || || Sbjct 1816867 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 1816926 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| ||||| || || | ||| ||||| | Sbjct 1816927 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGG 1816986 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || |||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 1816987 AGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 1817046 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || ||||||| ||||| ||||| |||||||| || Sbjct 1817047 CACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 1817100 >seq615 Length=2269971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCT---GAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| ||| |||||||| |||| || ||||| || || |||| | || || ||| Sbjct 1647533 TGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCTGACAGAGTGCAGCCATCCTCTAGC 1647474 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 || ||||| | || ||||| ||||| || || | || | || |||||||||| || | Sbjct 1647473 TGTTTGCCCACAAAAATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCC-TGGAT 1647415 Query 41777 TTTTGCTTCAACGACGACA-CAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||| |||| || || ||||| || | ||| ||||| | || || || || || Sbjct 1647414 TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 1647355 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| || || |||||||| Sbjct 1647354 CGTCAGGGTCTTCACAAAGATCTGCAT 1647328 >seq89 Length=3644534 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||||||||| || ||||| || ||||||| | || || ||||| | ||| ||||| Sbjct 1710816 CTCCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAA 1710757 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 |||| ||||| ||||| | || | || ||||||||| ||||||| Sbjct 1710756 ACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTT 1710709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462115767147600